hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01037/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1499 ( 662 res) mph01037 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- NPL4 NPL4 family 734.8 3.7e-217 1 zf-NPL4 NPL4 family, putative zinc binding region 419.8 2.5e-122 1 zf-RanBP Zn-finger in Ran binding protein and others 7.6 0.86 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-NPL4 1/1 158 300 .. 1 149 [] 419.8 2.5e-122 NPL4 1/1 302 611 .. 1 338 [] 734.8 3.7e-217 zf-RanBP 1/1 634 662 .] 1 32 [] 7.6 0.86 Alignments of top-scoring domains: zf-NPL4: domain 1 of 1, from 158 to 300: score 419.8, E = 2.5e-122 *->rViEDevDqeLeKeDGlIkRsrDskLCrHGpkGmCvyCSPLEPyDEs +V+EDe+Dq+L+K+DG+I+RsrD++LCrHGp+G+Cv+C+PLEP+DE+ mKIAA1499 158 NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDED 204 YLnhkEnkIKHlSFHaYlRKlnsnanKkesGksfIspLeeisfrIKegCh YLnh+E+++KH+SFHaY+RKl+++a+K Gk++ +Le+is++IK+gC mKIAA1499 205 YLNHLEPPVKHMSFHAYIRKLTGGADK---GKFV--ALENISCKIKSGC- 248 eGHpPWPkGICsKCQPSAITLNrQefRhVDhveFenseIvdrFLnaWRkT eGH+PWP+GIC+KCQPSAITLNrQ++RhVD+++Fen++++drFL++WRkT mKIAA1499 249 EGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKT 298 Gf<-* G+ mKIAA1499 299 GN 300 NPL4: domain 1 of 1, from 302 to 611: score 734.8, E = 3.7e-217 *->RfGylYGrytehknvPLGIkavVeAIYEPPQvgteDgleLleDadee +fGylYGrytehk++PLGI+a+V+AIYEPPQ+gt+++leLleD+++e mKIAA1499 302 HFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAE 348 erLqVDaiAegLGLrRVGlIFTDlvdadsaeGtVlykRHkDsYFLSseEV + VD+iA +LGLr+VG+IFTDlv++d+++GtV+y+R+kD+YFLSseE+ mKIAA1499 349 V---VDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEEC 395 itAAelQtkHPNickySedghfgSKfVTlVisGdlsgeVhfesYQVSnqC itA+++Q+kHPNic++S+dghfgSKfVT+V++G+++++Vhfe+YQVSnqC mKIAA1499 396 ITAGDFQNKHPNICRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQC 445 vaLvkadllETEippkddPeLayvkkevverehYVPDVfYkkkdkYGkev +aLv++++l +p+kd+PeL+y+k++++e+ YVPDVfYk++dk+G+e+ mKIAA1499 446 MALVRDECL---LPCKDAPELGYAKESSSEQ--YVPDVFYKDIDKFGNEI 490 keNAkPAlPVdyLLVdvtigfPktDtePdytFsvstsgplSakFpiENRd +++A+P lPV+yL++d+t++fPk +P+ytFs+s++ p FpiENRd mKIAA1499 491 TQLARP-LPVEYLIIDITTTFPK---DPVYTFSISQN-P----FPIENRD 531 alGqlqdmaaLktylsrakssGDFnpflekiSnFHLLLyiatllilspld +lG++qd+++L+tyls+++s ++fl++iS+FHLLL+++t++++ pl+ mKIAA1499 532 VLGETQDFHSLATYLSQNTS----SVFLDTISDFHLLLFLVTNEVM-PLQ 576 ewvplLleAVkardeelalkwakelQSvVsegwalLiella<-* ++++lLleAV++r+eela++w+k se+wa++++l++ mKIAA1499 577 DSISLLLEAVRTRNEELAQTWKK------SEQWATIEQLCS 611 zf-RanBP: domain 1 of 1, from 634 to 662: score 7.6, E = 0.86 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* +W C +C+++N + + +C +C+ p+ mKIAA1499 634 TSA-MWAC-QHCTFMNQPGTGHCEMCSLPR-T 662 //