hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid15001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1497  ( 721 res)   mid15001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate   114.2    1.5e-29   9
IGc2     Immunoglobulin C-2 Type                         64.4    1.4e-14   1
LRRCT    Leucine rich repeat C-terminal domain           49.2    5.4e-10   1
IG       Immunoglobulin                                  44.1    1.9e-08   1
LRR_SD22 Leucine-rich repeat, SDS22-like subfamily       27.0     0.0027   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_SD22   1/4      99   120 ..     1    22 []     7.2  1.1e+02
LRR_TYP    1/9      99   122 ..     1    24 []    12.5       12
LRR_TYP    2/9     123   146 ..     1    24 []    20.6     0.22
LRR_TYP    3/9     147   170 ..     1    24 []    32.7  5.2e-05
LRR_SD22   2/4     147   173 ..     1    22 []    12.7       22
LRR_TYP    4/9     171   194 ..     1    24 []    20.7      0.2
LRR_TYP    5/9     219   242 ..     1    24 []     7.7       48
LRR_SD22   3/4     243   264 ..     1    22 []     7.8       90
LRR_TYP    6/9     243   266 ..     1    24 []    11.2       18
LRR_SD22   4/4     267   288 ..     1    22 []    10.9       38
LRR_TYP    7/9     267   290 ..     1    24 []    16.8      3.1
LRR_TYP    8/9     316   340 ..     1    24 []     3.2  1.7e+02
LRR_TYP    9/9     341   364 ..     1    24 []     7.6       49
LRRCT      1/1     376   428 ..     1    55 []    49.2  5.4e-10
IGc2       1/1     443   511 ..     1    56 []    64.4  1.4e-14
IG         1/1     437   522 ..     1    58 []    44.1  1.9e-08

Alignments of top-scoring domains:
LRR_SD22: domain 1 of 4, from 99 to 120: score 7.2, E = 1.1e+02
                   *->LtnLeeLdLsqNkIkkiENLde<-*
                      L nL+eLd+sqN  + i  +     
   mKIAA1497    99    LFNLTELDFSQNNFTNIKEVGL    120  

LRR_TYP: domain 1 of 9, from 99 to 122: score 12.5, E = 12
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL+eLd s N++t + +  +++   
   mKIAA1497    99    LFNLTELDFSQNNFTNIKEVGLAN    122  

LRR_TYP: domain 2 of 9, from 123 to 146: score 20.6, E = 0.22
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+L+ Nq+++  +  +q+   
   mKIAA1497   123    LTQLTTLHLEENQISEMTDYCLQD    146  

LRR_TYP: domain 3 of 9, from 147 to 170: score 32.7, E = 5.2e-05
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL+eL+ ++Nq++++ ++aF+g   
   mKIAA1497   147    LSNLQELYINHNQISTISANAFSG    170  

LRR_SD22: domain 2 of 4, from 147 to 173: score 12.7, E = 22
                   *->LtnLeeLdLsqNkI.....kkiENLde<-*
                      L+nL+eL++++N+I++ +   +++L +   
   mKIAA1497   147    LSNLQELYINHNQIstisaNAFSGLKN    173  

LRR_TYP: domain 4 of 9, from 171 to 194: score 20.7, E = 0.2
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL +L+L++N+L+ + ++ F++   
   mKIAA1497   171    LKNLLRLHLNSNKLKVIDSRWFDS    194  

LRR_TYP: domain 5 of 9, from 219 to 242: score 7.7, E = 48
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nLr+L L +  Lt +P +a+ g   
   mKIAA1497   219    LSNLRSLVLAGMYLTDVPGNALVG    242  

LRR_SD22: domain 3 of 4, from 243 to 264: score 7.8, E = 90
                   *->LtnLeeLdLsqNkIkkiENLde<-*
                      L+ Le+L++++Nk+ k+  L     
   mKIAA1497   243    LDSLESLSFYDNKLIKVPQLAL    264  

LRR_TYP: domain 6 of 9, from 243 to 266: score 11.2, E = 18
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L+  +N+L  +P+ a+q    
   mKIAA1497   243    LDSLESLSFYDNKLIKVPQLALQK    266  

LRR_SD22: domain 4 of 4, from 267 to 288: score 10.9, E = 38
                   *->LtnLeeLdLsqNkIkkiENLde<-*
                        nL+ LdL++N I+ki+  d    
   mKIAA1497   267    VPNLKFLDLNKNPIHKIQEGDF    288  

	[output cut off at A = 10 top alignments]
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