hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mid/mid15001/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1497 ( 721 res) mid15001 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 91.5 1.7e-23 13 I-set Immunoglobulin I-set domain 60.9 2.8e-14 1 ig Immunoglobulin domain 31.7 1.7e-05 1 LRRCT Leucine rich repeat C-terminal domain 22.3 0.011 1 LRRNT Leucine rich repeat N-terminal domain 13.4 0.72 1 V-set Immunoglobulin V-set domain 11.3 0.046 1 fn3 Fibronectin type III domain 8.2 0.24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/1 36 76 .. 1 34 [] 13.4 0.72 LRR_1 1/13 78 100 .. 1 25 [] 2.6 7.3e+02 LRR_1 2/13 101 124 .. 1 25 [] 16.3 0.73 LRR_1 3/13 125 148 .. 1 25 [] 10.5 36 LRR_1 4/13 149 172 .. 1 25 [] 20.1 0.054 LRR_1 5/13 173 196 .. 1 25 [] 8.6 75 LRR_1 6/13 197 220 .. 1 25 [] 8.0 95 LRR_1 7/13 221 244 .. 1 25 [] 10.7 33 LRR_1 8/13 245 268 .. 1 25 [] 10.7 34 LRR_1 9/13 269 292 .. 1 25 [] 12.9 7.6 LRR_1 10/13 293 317 .. 1 25 [] 3.2 5.9e+02 LRR_1 11/13 318 342 .. 1 25 [] 7.7 1.1e+02 LRR_1 12/13 343 366 .. 1 25 [] 5.3 2.6e+02 LRR_1 13/13 367 391 .. 1 25 [] 6.2 1.9e+02 LRRCT 1/1 401 428 .. 1 26 [] 22.3 0.011 ig 1/1 445 506 .. 1 65 [] 31.7 1.7e-05 V-set 1/1 430 519 .. 1 130 [] 11.3 0.046 I-set 1/1 429 522 .. 1 97 [] 60.9 2.8e-14 fn3 1/1 528 610 .. 1 84 [] 8.2 0.24 Alignments of top-scoring domains: LRRNT: domain 1 of 1, from 36 to 76: score 13.4, E = 0.72 *->aCpapCtCs.......er.ytdglvVdCsgrgLtvavPrdlP<-* Cp+ C+C+ ++ ++ +y +++VdC ++ Lt ++P l+ mKIAA1497 36 ECPQLCVCEirpwftpQStYREATTVDCNDLRLT-RIPGNLS 76 LRR_1: domain 1 of 13, from 78 to 100: score 2.6, E = 7.3e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* ++L L++ N ++ +++ + l+ l mKIAA1497 78 DTQVLLLQS-N-NIAKTVDE-LqQLF 100 LRR_1: domain 2 of 13, from 101 to 124: score 16.3, E = 0.73 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL+eLd+s N +++ + + +l +l+ mKIAA1497 101 NLTELDFSQ-N-NFT-NIKEVgLaNLT 124 LRR_1: domain 3 of 13, from 125 to 148: score 10.5, E = 36 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L++L+L+ N ++s ++ + l++l+ mKIAA1497 125 QLTTLHLEE-N-QIS-EMTDYcLqDLS 148 LRR_1: domain 4 of 13, from 149 to 172: score 20.1, E = 0.054 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL+eL++++ N ++s ++++++++gl+ mKIAA1497 149 NLQELYINH-N-QIS-TISANaFsGLK 172 LRR_1: domain 5 of 13, from 173 to 196: score 8.6, E = 75 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL L+L++ N +l + + + +++ p mKIAA1497 173 NLLRLHLNS-N-KL-KVIDSRwFdSTP 196 LRR_1: domain 6 of 13, from 197 to 220: score 8.0, E = 95 *->nLeeLdLsgCNpslsgslppsl.glp<-* nLe+L ++ N ++ g l +++ l+ mKIAA1497 197 NLEILMIGE-N-PVIGILDMNFrPLS 220 LRR_1: domain 7 of 13, from 221 to 244: score 10.7, E = 33 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL++L L g +l+ ++p ++l gl mKIAA1497 221 NLRSLVLAG-M-YLT-DVPGNaLvGLD 244 LRR_1: domain 8 of 13, from 245 to 268: score 10.7, E = 34 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le+L++ + N +l +p +l++ p mKIAA1497 245 SLESLSFYD-N-KLI-KVPQLaLqKVP 268 LRR_1: domain 9 of 13, from 269 to 292: score 12.9, E = 7.6 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL+ LdL+ N ++ +++++++++ mKIAA1497 269 NLKFLDLNK-N-PIH-KIQEGdFkNML 292 LRR_1: domain 10 of 13, from 293 to 317: score 3.2, E = 5.9e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L+eL +++ +l s+ +l++lp mKIAA1497 293 RLKELGINN-MGELV-SVDRYaLdNLP 317 LRR_1: domain 11 of 13, from 318 to 342: score 7.7, E = 1.1e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L++L+ + Np+ls ++ ++++ p mKIAA1497 318 ELTKLEATN-NPKLS-YIHRLaFrSVP 342 LRR_1: domain 12 of 13, from 343 to 366: score 5.3, E = 2.6e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* Le+L L++ N l+ + + ++lp mKIAA1497 343 ALESLMLNN-N-ALN-AVYQKtVeSLP 366 LRR_1: domain 13 of 13, from 367 to 391: score 6.2, E = 1.9e+02 *->nLeeLdLsgCNpslsgs...lppsl.glp<-* nL+e+++++ N +l +++ ++ +++ + mKIAA1497 367 NLREISIHS-N-PL-RCdcvIHW-InSNK 391 LRRCT: domain 1 of 1, from 401 to 428: score 22.3, E = 0.011 *->dlrCasPeslrGqplldlpp..sdfsCp<-* ++ Ca+P+++rGq++++++ ++s+ +C mKIAA1497 401 SMFCAMPPEYRGQQVKEVLIqdSSEQCL 428 ig: domain 1 of 1, from 445 to 506: score 31.7, E = 1.7e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.ltgvlvtssenngdstyqt G ++ L C++ + p+++++W ++++ v++ s+ ++ +s + mKIAA1497 445 GTTLFLDCRAM--AEPEPEIYWVTPIGnKITVETLSDKYKLSSEGT- 488 sLtitnvtpeDggtYtCvv<-* L i n++ eD+g YtCv+ mKIAA1497 489 -LEIANIQIEDSGRYTCVA 506 V-set: domain 1 of 1, from 430 to 519: score 11.3, E = 0.046 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +++ + p ++ G+++ L C + + mKIAA1497 430 MISHDT-FPN----------HLNMDIGTTLFLDCRAM--------AE 457 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + ++yW+ p gn+ + e +++++ +s+ mKIAA1497 458 PEPEIYWVT--PI-------------------GNKITVETLSDKYKLSSE 486 pskgdfsLtIsnlqlsDsGtYyCa.....gggtrLtVl<-* ++ L I n+q +DsG Y+C+ + g tr+ mKIAA1497 487 GT-----LEIANIQIEDSGRYTCVaqnvqGADTRVATI 519 I-set: domain 1 of 1, from 429 to 522: score 60.9, E = 2.8e-14 *->PkF..tqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssv P +++++ p ++ +G +++++C++ +PeP++ W G ++++ mKIAA1497 429 PMIshDTFPNHLNMDIGTTLFLDCRAMAEPEPEIYWVTPiGNKITV- 474 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL + sd++k + +g tL+I n+q++DsG YtCvA+N G ++ a+ mKIAA1497 475 ETLSDKYKLSSEG-----TLEIANIQIEDSGRYTCVAQNVQGADTRVATI 519 tVq<-* +V mKIAA1497 520 KVN 522 fn3: domain 1 of 1, from 528 to 610: score 8.2, E = 0.24 *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge.. ++ + v+ + s s+ +sW+ + + ++++ +++ +++ + mKIAA1497 528 GAQVLKIYVKQTESHSILVSWKVN---SNVMTSNLKW-SSA-TMKid 569 ....wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-* +++ + + +vp + ++y+lt L+P t+Yev+++ n + + + mKIAA1497 570 nphiTYTARVPVDVHEYNLTHLQPSTDYEVCLTVSNIH--QQT 610 //