hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04715/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1495  ( 268 res)   mbh04715

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology domain                        62.6    5.1e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1     151   254 ..     1   100 []    62.6  5.1e-14

Alignments of top-scoring domains:
CH: domain 1 of 1, from 151 to 254: score 62.6, E = 5.1e-14
                   *->eeeallrWinsll...kvtnfssdlkDGvvLckLlnslsPagsvdkk
                      + ++l++ ++s+l+    ++  ++l+DGvvLc+L+n+++P +sv  +
   mKIAA1495   151    QIRQLRNNLESRLkviLPDDIGAALMDGVVLCHLANHIRP-RSVASI 196  

                   k..........rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegn
                   + +++  ++ ++ k++ N++++l++++kl    Gv  + l+ p+++ e  
   mKIAA1495   197 HvpspavpklsMAKCRRNVENFLDACKKL----GVSQERLCLPHHILE-- 240  

                   enkklilgviwtLirl<-*
                     ++   +v  t+++l   
   mKIAA1495   241 --ERGLVKVGVTVQAL    254  

//