hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04715/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1495  ( 268 res)   mbh04715

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CH       Calponin homology (CH) domain                   65.7      1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CH         1/1     147   259 ..     1   121 []    65.7    1e-15

Alignments of top-scoring domains:
CH: domain 1 of 1, from 147 to 259: score 65.7, E = 1e-15
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                      +e+e +r +++ l+ +++         v   ++    l+DG++Lc+L
   mKIAA1495   147    EEREQIRQLRNNLESRLK---------VILPDDIGAALMDGVVLCHL 184  

                   lnklrPglidkkkv.....pslsrfdkleNlnlaldaaekeGlgiilvli
                   +n++rP+++  ++v+++  p+ls+ +++ N++++lda++k G+    +l+
   mKIAA1495   185 ANHIRPRSVASIHVpspavPKLSMAKCRRNVENFLDACKKLGVSQ-ERLC 233  

                   dpeDivegnpdPDeklvltllwqLirrfq<-*
                    p++i e +      +v  ++++L        
   mKIAA1495   234 LPHHILEERG---LVKVGVTVQALLELPT    259  

//