hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp00060/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1490  ( 758 res)   mbp00060

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       110.4      2e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1     222   319 ..     1   114 []   110.4    2e-28

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 222 to 319: score 110.4, E = 2e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+l+vg+         +k++a  H++vL++    S+yF a+f+s+
   mKIAA1490   222    CDVILIVGN---------RKIPA--HRLVLSSV---SDYFAAMFTSd 254  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     + ++++i +++      ++p a+  l++f Yt+ l+l+e+   ++e l
   mKIAA1490   255 vceakqeeIKMEG------IDPNALWDLVQFAYTgCLELKED---TIENL 295  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++A +l    q+p++ve+C+ fl k l   
   mKIAA1490   296 LAAACLL----QLPqVVEVCCHFLMKLL    319  

//