hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp00060/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1490 ( 758 res) mbp00060 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 345.8 4.7e-100 6 BACK BTB And C-terminal Kelch 168.1 1.5e-46 1 Kelch_2 Kelch motif 151.5 1.4e-41 5 BTB BTB/POZ domain 129.1 7.9e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 212 319 .. 1 135 [] 129.1 7.9e-35 BACK 1/1 324 425 .. 1 103 [] 168.1 1.5e-46 Kelch_1 1/6 459 503 .. 1 45 [] 22.7 0.0084 Kelch_1 2/6 505 550 .. 1 45 [] 73.4 4.6e-18 Kelch_2 1/5 505 550 .. 1 54 [] 38.6 1.4e-07 Kelch_1 3/6 552 597 .. 1 45 [] 65.8 8.9e-16 Kelch_2 2/5 552 597 .. 1 54 [] 28.0 0.00022 Kelch_1 4/6 599 644 .. 1 45 [] 66.1 7.5e-16 Kelch_2 3/5 599 644 .. 1 54 [] 30.1 5.3e-05 Kelch_1 5/6 646 697 .. 1 45 [] 62.1 1.2e-14 Kelch_2 4/5 646 697 .. 1 54 [] 25.2 0.0015 Kelch_1 6/6 699 744 .. 1 45 [] 66.2 6.9e-16 Kelch_2 5/5 699 744 .. 1 54 [] 34.7 2.1e-06 Alignments of top-scoring domains: BTB: domain 1 of 1, from 212 to 319: score 129.1, E = 7.9e-35 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++ ++q +lcDV+L vg+ +k++AH++vL++ S+YF a+ mKIAA1490 212 MENYLKQQQLCDVILIVGN--------RKIPAHRLVLSSVSDYFAAM 250 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ +e +++ ei +e+++p ++ l++f+Ytg l+++ mKIAA1490 251 FTSD------VCEAKQE-EIKMEGIDPNALWDLVQFAYTGCLELK----- 288 PssckseenvedlLalAadllqipslvdkCeefliksl<-* e+++e+lLa+A +llq+p +v++C++fl k l mKIAA1490 289 ------EDTIENLLAAA-CLLQLPQVVEVCCHFLMKLL 319 BACK: domain 1 of 1, from 324 to 425: score 168.1, E = 1.5e-46 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAda+gc eL+++A++++++n++eV++++EFl L++e+L++ mKIAA1490 324 CLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHK 370 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ nVp+Ee++f+A+m Wvk+d ++R+ +l+ LL+ +RLpLL+p+ mKIAA1490 371 LLASDDVNVPDEETIFHALMMWVKYDMQRRCSDLSMLLAFIRLPLLPPQI 420 Llevve<-* L + +e mKIAA1490 421 LAD-LE 425 Kelch_1: domain 1 of 6, from 459 to 503: score 22.7, E = 0.0084 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR+ ++ g +Y++GG+d+++ ++e+YD++tn W + m+ mKIAA1490 459 PRTKPRKSTV-GTLYAVGGMDNnKGATTIEKYDLRTNLWIQAGMMN 503 -* mKIAA1490 - - Kelch_1: domain 2 of 6, from 505 to 550: score 73.4, E = 4.6e-18 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+v+d k++viGG+dg + ln+ve+Y+p+t+tWt lp+m+ mKIAA1490 505 RRLQFGVAVIDEKLFVIGGRDGlKTLNTVECYNPKTKTWTVLPPMS 550 -* mKIAA1490 - - Kelch_2: domain 1 of 5, from 505 to 550: score 38.6, E = 1.4e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++kl+v+GG+ +g ++++ +++p+t++W mKIAA1490 505 RRLQFGVAVIDEKLFVIGGR--------DGLKTLNTVECYNPKTKTW 543 eklpalp<-* + lp++ mKIAA1490 544 TVLPPMS 550 Kelch_1: domain 3 of 6, from 552 to 597: score 65.8, E = 8.9e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g iY++GG+dg ++ln+ve++Dp +++Wt+++sm+ mKIAA1490 552 HRHGLGVTVLEGPIYAVGGHDGwSYLNTVERWDPQSQQWTYVASMS 597 -* mKIAA1490 - - Kelch_2: domain 2 of 5, from 552 to 597: score 28.0, E = 0.00022 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp++++W mKIAA1490 552 HRHGLGVTVLEGPIYAVGGH--------DGWSYLNTVERWDPQSQQW 590 eklpalp<-* ++++++ mKIAA1490 591 TYVASMS 597 Kelch_1: domain 4 of 6, from 599 to 644: score 66.1, E = 7.5e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs +gv++l+gk+Y +GG+dg+++l+s e+YDp tn+W+++++m mKIAA1490 599 ARSTVGVAALNGKLYSVGGRDGsSCLSSMEYYDPHTNKWSMCAPMC 644 -* mKIAA1490 - - Kelch_2: domain 3 of 5, from 599 to 644: score 30.1, E = 5.3e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r+ + ++ ++gkly+vGG+ +g++ +s++ ++dp tn+W mKIAA1490 599 ARSTVGVAALNGKLYSVGGR--------DGSSCLSSMEYYDPHTNKW 637 eklpalp<-* + +++++ mKIAA1490 638 SMCAPMC 644 Kelch_1: domain 5 of 6, from 646 to 697: score 62.1, E = 1.2e-14 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv+++dg +Y++GG+d + +++ ++ l+ ve+YDp+t+tWt+ mKIAA1490 646 RRGGVGVATCDGFLYAVGGHDApasnhcsRLLDYVERYDPKTDTWTM 692 lpsmp<-* +++++ mKIAA1490 693 VAPLS 697 Kelch_2: domain 4 of 5, from 646 to 697: score 25.2, E = 0.0015 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly vGG+ +++ +++ +++ + ++dp+t +W mKIAA1490 646 RRGGVGVATCDGFLYAVGGH--DAPASNHCSRLLDYVERYDPKTDTW 690 eklpalp<-* + +++l mKIAA1490 691 TMVAPLS 697 Kelch_1: domain 6 of 6, from 699 to 744: score 66.2, E = 6.9e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR +gv+ l++++Y++GGydg+++ln+ e+YDp tn+Wt+++s++ mKIAA1490 699 PRDAVGVCLLGDRLYAVGGYDGqTYLNTMESYDPQTNEWTQMASLN 744 -* mKIAA1490 - - Kelch_2: domain 5 of 5, from 699 to 744: score 34.7, E = 2.1e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr + ++++g++ly vGG+ +g +++++ +dp+tn+W mKIAA1490 699 PRDAVGVCLLGDRLYAVGGY--------DGQTYLNTMESYDPQTNEW 737 eklpalp<-* + +++l mKIAA1490 738 TQMASLN 744 //