hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01025/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1489  ( 627 res)   mph01025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       110.0    2.8e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      35   132 ..     1   114 []   110.0  2.8e-28

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 35 to 132: score 110.0, E = 2.8e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +D++l+v+g         ++f++  Hk+vLa+c   S+yF+a+f s+
   mKIAA1489    35    TDIVLIVEG---------TEFPC--HKMVLATC---SSYFRAMFMSg 67   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    +++++++++l        v++ a+++++ + Yt+ l ++++   +ve+l
   mKIAA1489    68 lseskqthVHLRN------VDAAALQMIIAYAYTgNLAVNDS---TVEQL 108  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                    e+A fl    q++++ + C e+l+k++   
   mKIAA1489   109 YETACFL----QVEdVLQRCREYLIKKI    132  

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