hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk03351/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1488  ( 425 res)   mpk03351

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   119.8    3.1e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     201   392 ..     1   219 []   119.8  3.1e-31

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 201 to 392: score 119.8, E = 3.1e-31
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      +  + ++ Qke ++ + +++++++ ++TG+GKT++ ++++l+   ++
   mKIAA1488   201    KKlPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIER 247  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   +     kg ++r+++++P+r+ a+ +ae+++              +  ++
   mKIAA1488   248 G-----KGSACRIVCTQPRRISAISVAERVA--T----------ERAESC 280  

                   ygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl.nld
                     G+s     +q+r   + + +++ il++T+g++l+ l++++  +l+ ++
   mKIAA1488   281 GNGnST---GYQIRLQSRLPRkqgSILYCTTGIILQWLqSDS--RLsSVS 325  

                   lvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppe
                   +++lDE+H++          ++d+l++++k l + +++++++l+SAT+ +
   mKIAA1488   326 HIVLDEIHERN--------LQSDVLMtVIKDLlhfRSDLKVILMSATL-N 366  

                   ienllklflnlpelfpnpvfisvgftlepieqf<-*
                    e+++++f+n       p   ++gf  +p+ ++   
   mKIAA1488   367 AEKFSEYFGN------CPMIHIPGF-TFPVVEY    392  

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