hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk03351/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1488  ( 425 res)   mpk03351

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEAD     DEAD/DEAH box helicase                          56.6    5.4e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEAD       1/1     204   370 ..     1   266 []    56.6  5.4e-13

Alignments of top-scoring domains:
DEAD: domain 1 of 1, from 204 to 370: score 56.6, E = 5.4e-13
                RF    xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->ptpi.QaeaipaileneGfalredvlssggmdrlvlqApTGSGKTla
                      p+   Q+e +++i   ++   +  v         v++++TG GKT+ 
   mKIAA1488   204    PSYGmQKELVNLI---NN---H-QVT--------VISGETGCGKTTQ 235  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   fllPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLa
                       il  + + +g+ sa                    ++++  P+r  a
   mKIAA1488   236 VTQFILD-NYIERGKGSA-------------------CRIVCTQPRRISA 265  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx
                   eQiyeelkkllkilalsplgvnellrrigtglrvavl.slyGGsslkdql
                     ++e++    +                       + ++ + G  ++ q 
   mKIAA1488   266 ISVAERVATERA---------------------ESCGnGNSTGYQIRLQS 294  

                RF xxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx
                   dkl.rgkreskggpdIvvgTPgrLldllrngrinikievssertgkl.kl
                   +  ++       +  I+++T g +l  l                ++ ++l
   mKIAA1488   295 RLPrK-------QGSILYCTTGIILQWL----------------QSDsRL 321  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   knlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtil
                   +++   + +VlDE+h+   +     ++l  +++ l     +r++l     
   mKIAA1488   322 SSV---SHIVLDEIHERNLQ----SDVLMTVIKDLLH---FRSDL----- 356  

                RF xxxxxxxxxxxxxxxxxxxxxxx   
                   HqkpniQtllfSATlpprevedl<-*
                         +++l+SATl ++  e++   
   mKIAA1488   357 ------KVILMSATL-NA--EKF    370  

//