hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mth/mth00273/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1483  ( 492 res)   mth00273

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     47.5    1.7e-09   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/4     232   254 ..     1    23 []    28.2   0.0011
ZnF_C2H2   2/4     341   363 ..     1    23 []    28.4  0.00098
ZnF_C2H2   3/4     368   388 ..     1    23 []     2.8  1.5e+02
ZnF_C2H2   4/4     426   446 ..     1    23 []     8.4       35

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 4, from 232 to 254: score 28.2, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cg++f+ +++L++H+++H   
   mKIAA1483   232    YACHL-CGRRFTLRsSLREHLQIH    254  

ZnF_C2H2: domain 2 of 4, from 341 to 363: score 28.4, E = 0.00098
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i Cg++f +k++ ++Hm++H   
   mKIAA1483   341    YECTI-CGRKFIQKsHWREHMYIH    363  

ZnF_C2H2: domain 3 of 4, from 368 to 388: score 2.8, E = 1.5e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC+  C+ksf+++++  rH+      
   mKIAA1483   368    FKCST-CDKSFCRAnQAARHVC--    388  

ZnF_C2H2: domain 4 of 4, from 426 to 446: score 8.4, E = 35
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k+fs++++ ++H       
   mKIAA1483   426    YKCNL-CDKTFSTPnEVVKHSC--    446  

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