hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth00273/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1483  ( 492 res)   mth00273

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          56.7    5.1e-13   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/4     232   254 ..     1    24 []    29.9  5.9e-05
zf-C2H2    2/4     341   363 ..     1    24 []    30.1  5.2e-05
zf-C2H2    3/4     368   390 ..     1    24 []     6.6       23
zf-C2H2    4/4     426   446 ..     1    24 []    10.9      8.8

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 4, from 232 to 254: score 29.9, E = 5.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  Cg++F+ +s+L+ Hl++H   
   mKIAA1483   232    YACH-LCGRRFTLRSSLREHLQIH    254  

zf-C2H2: domain 2 of 4, from 341 to 363: score 30.1, E = 5.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++F +ks+ + H+ +H   
   mKIAA1483   341    YECT-ICGRKFIQKSHWREHMYIH    363  

zf-C2H2: domain 3 of 4, from 368 to 390: score 6.6, E = 23
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+  C+ksF+r  +  rH       
   mKIAA1483   368    FKCS-TCDKSFCRANQAARHVCLN    390  

zf-C2H2: domain 4 of 4, from 426 to 446: score 10.9, E = 8.8
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C+k+Fs++ +  +H  ++   
   mKIAA1483   426    YKCN-LCDKTFSTPNEVVKH--SC    446  

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