hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia03019/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1482  ( 815 res)   mia03019

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            26.9     0.0028   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     202   273 ..     1    67 []    26.9   0.0028

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 202 to 273: score 26.9, E = 0.0028
                   *->vs.wspesVaeWLesigleq.YadnFrkngidgeellllt...seed
                      v++w+ e+  +WL       +Y++nFr+n++ g  l++   +++  +
   mKIAA1482   202    VHnWTLEDTLQWLIEFVELPqYEKNFRDNNVKGTTLPRIAvheTSFM 248  

                   LkelGitllGhRkkIlsaiqklkeq<-*
                   + +l+i++  hR+k++ +  +   +   
   mKIAA1482   249 ISQLKISDRSHRQKLQLKALDVVLF    273  

//