hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01940/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1479  ( 1009 res)   mbg01940

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sema     Sema domain                                    598.5   4.1e-176   1
PSI      Plexin repeat                                   46.0    8.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sema       1/1      70   507 ..     1   490 []   598.5 4.1e-176
PSI        1/1     525   580 ..     1    63 []    46.0  8.1e-10

Alignments of top-scoring domains:
Sema: domain 1 of 1, from 70 to 507: score 598.5, E = 4.1e-176
                   *->frtllldedrgrLyVGArNhvyvLnledls..er.lqqkigWpsspg
                      f+++l+   r++Ly+++r+ vy +nl+++ ++e+  ++k++W s   
   mKIAA1479    70    FQLMLKI--RDTLYIAGRDQVYTVNLNEIPqtEViPSKKLTWRSR-- 112  

                   eekceeCkmkgkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtl
                   ++++e C+mkgk+    ++eC+Nfi+V +p nd+ ++vCGTnaF+P+C++
   mKIAA1479   113 QQDRENCAMKGKH----KDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRY 158  

                   inlgdrseaviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrt
                   ++l +             + +  ++e+sG +rCP+d++++++++++ +  
   mKIAA1479   159 YRLRT-------------LEY-DGEEISGLARCPFDARQTNVALFA-D-- 191  

                   geLYsGtviDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFV
                   g+LYs+tv+D      F+ +d++I+Rs+g+ + lrT ++dskw++eP+F 
   mKIAA1479   192 GKLYSATVAD------FLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFL 235  

                   dsypipyvhsfdDdkVYFFFrEtaveyspnsgkaiysRVaRvCknDvGGr
                   ++  ++       ++VYFFFrE+ave++ n gka+ysRVaR+CknD+GG 
   mKIAA1479   236 HAIEYG-------NYVYFFFREIAVEHN-NLGKAVYSRVARICKNDMGGS 277  

                   rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL
                   +++ ++ WT+FLKARLnCSvpG  +   fyF++LQ++ +++  +      
   mKIAA1479   278 QRVLEKHWTSFLKARLNCSVPG--DSF-FYFDVLQSITDIIQING----- 319  

                   gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs
                         p + GVFtt+ nsi+g    SAVCaFsm dI+ vF +G fk+q 
   mKIAA1479   320 -----IPTVVGVFTTQLNSIPG----SAVCAFSMDDIEKVF-KGRFKEQ- 358  

                   nEgpnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfiksh
                    ++p+s w+ ++  kvP+PRPG+C++    + y+++ d+PDdtl fiksh
   mKIAA1479   359 -KTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTLAFIKSH 407  

                   pLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTd
                   pLmd +vpP+   P+f++t+v+yrlT+I Vd  + ag +q+YtV+F+G +
   mKIAA1479   408 PLMDSAVPPIADEPWFTKTRVRYRLTAIEVD--RSAGPYQNYTVIFVGSE 455  

                   dGtvlKkvvvlsrsss.syeevvleelqvfkdprieP.......vqnlei
                    G vlK ++    s  ++  +v+lee++ +++ +++++++++++v++l++
   mKIAA1479   456 AGVVLKVLAKT--SPFsLNDSVLLEEIEAYNPAKCSAeseedrkVVSLQL 503  

                   sskq<-*
                      +   
   mKIAA1479   504 DKDH    507  

PSI: domain 1 of 1, from 525 to 580: score 46.0, E = 8.1e-10
                   *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae
                      +C++y+sC+ sC+a+rdp yCgW s+ g C r +           + 
   mKIAA1479   525    RCERYGSCkKSCIASRDP-YCGWLSQ-GVCERVT-------LGMLPG 562  

                   .pendqwldwswssskCp<-*
                   ++e+d  ++ + +  +C    
   mKIAA1479   563 gYEQDTEYGNTAHLGDCH    580  

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