hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00522/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1478  ( 644 res)   mph00522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   185.3    5.7e-51   1
C1       Protein kinase C conserved region 1 (C1) dom    32.5    5.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1         1/1     304   352 ..     1    61 []    32.5  5.7e-05
RhoGAP     1/1     377   553 ..     1   193 []   185.3  5.7e-51

Alignments of top-scoring domains:
C1: domain 1 of 1, from 304 to 352: score 32.5, E = 5.7e-05
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+fv +t+ kp  C  C+k+i+++        +l+C++C+++ H  C
   mKIAA1478   304    HDFVSKTViKPESCVPCGKRIKFGKL------SLKCRDCRLVSHPEC 344  

                   aekvpaqshksglsC<-*
                    ++ p+       +C   
   mKIAA1478   345 RDRCPL-------PC    352  

RhoGAP: domain 1 of 1, from 377 to 553: score 185.3, E = 5.7e-51
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      ++iP+iv++C++++e+rGl++ G+YR+sG   +vkeL+e+f + +  
   mKIAA1478   377    PMIPAIVVSCVNEIEQRGLTEAGLYRISGCDRTVKELKEKFLKVKTv 423  

                   dldsldesiteesedleey.dvhdvAglLKlyLReLPePLltfelyeefi
                                 +l++ +d+h++++lLK +LR+L ePLltf l++ f+
   mKIAA1478   424 P-------------LLSKVdDIHVICSLLKDFLRNLKEPLLTFWLSKAFM 460  

                   eaaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.H
                   eaa++               de+    a+++++s+LP+anr+tL +L+ H
   mKIAA1478   461 EAAEI--------------TDEDNSTAAMYQAVSELPQANRDTLAFLMiH 496  

                   LnrVaehsevNkMtarNLAivFgPtLlrpp.........ltdikhqnkvv
                   L+rV+ +s+ +kM++ NLA+vFgPt+  +  +++++ +  +dik q kvv
   mKIAA1478   497 LQRVS-QSPDTKMDIANLAKVFGPTIVAHTvpnpdpvtmFQDIKRQLKVV 545  

                   etlienad<-*
                   e l+  ++   
   mKIAA1478   546 ERLLSLPL    553  

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