hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00522/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1478  ( 644 res)   mph00522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  215.2    9.8e-61   1
C1_1     Phorbol esters/diacylglycerol binding domain    36.4    6.5e-07   1
C1_3     C1-like domain                                   8.4       0.35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_3       1/1     315   345 ..     1    30 []     8.4     0.35
C1_1       1/1     304   355 ..     1    55 []    36.4  6.5e-07
RhoGAP     1/1     380   530 ..     1   155 []   215.2  9.8e-61

Alignments of top-scoring domains:
C1_3: domain 1 of 1, from 315 to 345: score 8.4, E = 0.35
                   *->ktCdaCglpidg.dpfYsCseCdFvlHeeCa<-*
                        C  Cg+ i+++  + +C  C  v H eC    
   mKIAA1478   315    ESCVPCGKRIKFgKLSLKCRDCRLVSHPECR    345  

C1_1: domain 1 of 1, from 304 to 355: score 36.4, E = 6.5e-07
                   *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek
                      H+Fv + +  +p +C  Cg+++  ++gk  lkC++C l+ H +C  +
   mKIAA1478   304    HDFVSK-TVIKPESCVPCGKRI--KFGKLSLKCRDCRLVSHPECRDR 347  

                   VppeCgcg<-*
                    p  C++    
   mKIAA1478   348 CPLPCIPP    355  

RhoGAP: domain 1 of 1, from 380 to 530: score 215.2, E = 9.8e-61
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P+iv++C++++e+rGL++ G+yR+sG+  ++keL+e+f + + v l 
   mKIAA1478   380    PAIVVSCVNEIEQRGLTEAGLYRISGCDRTVKELKEKFLKVKTVPL- 425  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   + +  d+hv++slLK+FLR+L ePLltf l ++f+e aa++ de++   a
   mKIAA1478   426 LSKVDDIHVICSLLKDFLRNLKEPLLTFWLSKAFME-AAEITDEDNSTAA 474  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                   +++++++LP+aNrdtL++L+ hL+rV+q+ + +kM++ NLA vFgPt++ 
   mKIAA1478   475 MYQAVSELPQANRDTLAFLMIHLQRVSQSPD-TKMDIANLAKVFGPTIVA 523  

                   ppdgdsad<-*
                   + +  ++d   
   mKIAA1478   524 HTVP-NPD    530  

//