hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36325/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1477  ( 771 res)   mfj36325

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    372.5   2.6e-107   1
TyrKc    Tyrosine kinase, catalytic domain               94.9    9.6e-24   1
UBA      Ubiquitin associated domain                     44.7    1.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TyrKc      1/1      35   285 ..     1   280 []    94.9  9.6e-24
S_TKc      1/1      35   286 ..     1   231 []   372.5 2.6e-107
UBA        1/1     307   344 ..     1    38 []    44.7  1.2e-08

Alignments of top-scoring domains:
TyrKc: domain 1 of 1, from 35 to 285: score 94.9, E = 9.6e-24
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       +l k++G G+F +V +++   +++eVAVK + +   ++++++ + r
   mKIAA1477    35    YRLQKTIGKGNFAKVKLARHVltgREVAVKIIDKTQlnptsLQKLFR 81   

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E + Mk l  +HpNiVkL+ v+ +e       + l++vmEy++gG   dy
   mKIAA1477    82 EVRTMKIL--NHPNIVKLFEVIETE-------KTLYLVMEYASGGEVFDY 122  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   L ++++  + ++      QI +  +Y ++k++vHRDL A N L++++  +
   mKIAA1477   123 LVAHGR-MKEKEARAKFRQIVSAVQYCHQKCIVHRDLKAENLLLDADMNI 171  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk
                   KI+DFG s + + +       +  +     +g    P+   APE ++ +k
   mKIAA1477   172 KIADFGFSNEFTVG------NKLDTF----CGS--PPYA--APELFQGKK 207  

                   Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                   + +++ DVWS GV L+ + + G  P  g      + +e++e++ +G   +
   mKIAA1477   208 YDgPEVDVWSLGVILYTLVS-GSLPFDG-----QNLKELRERVLRG-KYR 250  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                   +P +        ++++  +l ++    +P +R + +++ ++r+   
   mKIAA1477   251 IPFY--------MSTDCENLLKKLLVLNPIKRGSLEQImKDRW    285  

S_TKc: domain 1 of 1, from 35 to 286: score 372.5, E = 2.6e-107
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+l k++GkG F+kV+lar++ tgr+vA+K+i++++ ++++ +++ r
   mKIAA1477    35    YRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDktqlnptslQKLFR 81   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E++ +k  +HPNIVkL++v+e+++ lylVmEy++G  G++fd+l+ +gr 
   mKIAA1477    82 EVRTMKIlNHPNIVKLFEVIETeKTLYLVMEYASG--GEVFDYLVAHGR- 128  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        + E+ear  frQi+sa++Y+H++ I+HRDLK eN+LLd + ++K+
   mKIAA1477   129 -----MKEkEARAKFRQIVSAVQYCHQKCIVHRDLKAENLLLDAdmNIKI 173  

                   aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily
                   aDFG++ +++ +++ +tf+G+p Y APE++++++Y++p+vD+WSlG+ily
   mKIAA1477   174 ADFGFSNEFtvgnklDTFCGSPPYAAPELFqgkKYDGPEVDVWSLGVILY 223  

                   ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek
                    l++G  PF++++l+++ +++++++++ + + S ++ +L+kklLv +P k
   mKIAA1477   224 TLVSGSLPFDgqNLKELRERVLrgkyripfymSTDCENLLKKLLVLNPIK 273  

                   Rlta.eaLedeldikaHPff<-*
                   R + +++++       + ++   
   mKIAA1477   274 RGSLeQIMK-------DRWM    286  

UBA: domain 1 of 1, from 307 to 344: score 44.7, E = 1.2e-08
                   *->deekieqLleMGFsreeavdALratngNverAaeyLls<-*
                      d+++i+ ++ MGF r+e+ dAL ++++++ +A+++Ll    
   mKIAA1477   307    DAKRIDIMVTMGFARDEINDALVSQKYDEVMATYILLG    344  

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