hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36368/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1476  ( 1369 res)   mfj36368

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBD      Methyl-CpG binding domain                       38.9    6.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBD        1/1     758   828 ..     1    87 []    38.9  6.7e-07

Alignments of top-scoring domains:
MBD: domain 1 of 1, from 758 to 828: score 38.9, E = 6.7e-07
                   *->edelrlPaLppGWrRetvqRksgKKssagkgDVyYisPcGkkLRsks
                        elr P L +GW Ret++R +g   ++  g+V+Y++PcGkkLR+ +
   mKIAA1476   758    DQELRIP-LDYGWQRETRVRNFG---GRLPGEVAYYAPCGKKLRQCP 800  

                   ElarYLhkngdlslaledPLRPEYlFdFnarvpvgpkitp<-*
                   + ++   + + ++l+ e         d  +r++ ++ ++    
   mKIAA1476   801 DMVK---GMQWCLLKEE---------DVIPRIRAMDGRRG    828  

//