hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36368/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1476  ( 1369 res)   mfj36368

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DDT      DDT domain                                      71.0    2.4e-17   1
MBD      Methyl-CpG binding domain                       33.8      4e-06   1
YL1      YL1 nuclear protein                            -90.6       0.62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBD        1/1     755   833 ..     1   118 []    33.8    4e-06
YL1        1/1     605   977 ..     1   307 []   -90.6     0.62
DDT        1/1    1047  1109 ..     1    63 []    71.0  2.4e-17

Alignments of top-scoring domains:
MBD: domain 1 of 1, from 755 to 833: score 33.8, E = 4e-06
                   *->krtkredrlpLppGWrRetvqRksGssanNnngkfDvyYysPvtGkk
                      ++++ e+r pL +GW+Ret++R++G +       ++v+Yy+P +Gkk
   mKIAA1476   755    VADDQELRIPLDYGWQRETRVRNFGGR-----LPGEVAYYAP-CGKK 795  

                   fRsksevir....YLgkngdsrkayldaesrtdlhSedrradsrrkrlkk
                   +R+ ++ +++ +  L k +d                              
   mKIAA1476   796 LRQCPDMVKgmqwCLLKEED------------------------------ 815  

                   lnkKgkvtslkledFdFttrlevgr<-*
                          + ++++  d ++++++ +   
   mKIAA1476   816 -------VIPRIRAMDGRRGRPPNP    833  

YL1: domain 1 of 1, from 605 to 977: score -90.6, E = 0.62
                   *->aatRsRRaNAGNrlkkLLeeEeerdetqtsvssleDEfykinlGlFq
                      a+  + R +         +++++++         +D ++ + +    
   mKIAA1476   605    ALVEQFRGT---------DSDVPSS---------KDSEDSNED---- 629  

                   EdEeDeEYeeeeeedeeeDevDSDFdddedseelereeeskssDnediee
                   E+E+DeE  ee++ed+e+D   S++d             s+s+   ++ +
   mKIAA1476   630 EEEDDEEEDEEDDEDDESDDSQSESD-----------SNSQSD---SEGS 665  

                   eDdvnvNaDdmfSDsdselEeegsdeeegeKelvkqeKakkkklkKkkkk
                   eD           D++ ++Ee++sd e geK  v           + +  
   mKIAA1476   666 ED-----------DEEKDQEESDSDTE-GEKPAVN----------LTQ-- 691  

                   klekynLeKqkgdekiknkksvppikkptpdsaaeapkgE..........
                                          + ++++    + +  + ++ + +++++
   mKIAA1476   692 -----------------------TSSSAKSPPSSLTAHSAphlhigsppg 718  

                   ..................................................
                   + +    ++++++   ++++++ +++++++++++++  ++++ + + + +
   mKIAA1476   719 sapaalcsesqppaflgtssstltstphsgtskrrrvaddqelripldyg 768  

                   ..................................................
                    +++++ ++ +++ +++     + +++ ++ ++  ++ +    ++++  +
   mKIAA1476   769 wqretrvrnfggrlpgevayyapcgkklrqcpdmvkgmqwcllkeedvip 818  

                   ..................................................
                   + +  ++++++++++++++ +++++ +++++++++ ++ +  ++++ +  
   mKIAA1476   819 riramdgrrgrppnpdrprareesrmkrrkgrppnvgsaefldntdakll 868  

                   ..................kkkrkltradslllssrRtSsRsstventk.a
                   ++ + ++  ++  + +  +k  k+++a++  ++++  ++ ++++e+ k++
   mKIAA1476   869 rklqaqeiarqaaqikllRKLQKQEQARV-AKEAKKQQAIMAAEEKRKqK 917  

                   vyerLkeaEerRKkiverirkkkemesqkeLTQEErLeEAkeTEkmNirS
                    +++ ++++e+ K+i+ ++ +k+       L  ++ LeE           
   mKIAA1476   918 EQMKIIKQQEKIKRIQQIRMEKE-------LRAQQILEE----------- 949  

                   LekykaqEeeKKkrrlalqlrkKrkfkpggpiirflStt<-*
                    +++++q ++  k++++    ++r+ +      ++l+++   
   mKIAA1476   950 -KELRRQQAVLLKHQER----ERRRQH------VMLMKA    977  

DDT: domain 1 of 1, from 1047 to 1109: score 71.0, E = 2.4e-17
                   *->sesfgdaLmvyEFLnsFGevLdLspftlddfiaaLleglldgsdllG
                        +f+d+Lmv++FL++FG+vL+++   +++ + +L+egll+ +d++G
   mKIAA1476  1047    GTTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMG 1093 

                   EvhllLlRsllrkeqe<-*
                   Ev++lL+R+l +++ +   
   mKIAA1476  1094 EVQDLLVRLLSAAVCD    1109 

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