hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh04351/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1475  ( 787 res)   msh04351

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Pep3_Vps18 Pep3/Vps18/deep orange family                254.5    1.4e-72   1
Clathrin   Region in Clathrin and VPS                    -1.6      0.032   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Pep3_Vps18   1/1     105   250 ..     1   172 []   254.5  1.4e-72
Clathrin     1/1     432   586 ..     1   156 []    -1.6    0.032

Alignments of top-scoring domains:
Pep3_Vps18: domain 1 of 1, from 105 to 250: score 254.5, E = 1.4e-72
                   *->GIvfGdlsEKqiyvnpasnlleeelslskvlfeieeklsdgkdrdep
                      G+++G l     +++++++ll+ee++     +e++ ++++g   ++p
   mKIAA1475   105    GVLYGSL-----DCGRPDSLLSEERV-----WEYPAGVGPG---ANP 138  

                   pkaivLTefHlLLLyanrVkaVnrLNNDVVFgeqvyeeqfdessdpvgea
                   p+aivLT+fH+LLL+a+rV+aV++L+     g++v++++f+e   ++g +
   mKIAA1475   139 PLAIVLTQFHFLLLLADRVEAVCTLT-----GQVVLRDHFLE---KFG-P 179  

                   LgGlvsDavkntyWlYTqnsiFelvVedEaRdVWkvYLdkgkyekALeya
                   L ++v+D++++ +W+YT++++F+++V++EaRdVW++YLd++++++A+ey+
   mKIAA1475   180 LRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYC 229  

                   reddeiepsqrdlVllksAdflfqd<-*
                   re    +p+++d+Vl+++Adf+f++   
   mKIAA1475   230 RE----RPDCLDTVLAREADFCFRQ    250  

Clathrin: domain 1 of 1, from 432 to 586: score -1.6, E = 0.032
                   *->lielsdpidvselVeife..krglleeLipyLesalk.ensfseepa
                       + l+ ++ ++ lV++ +++++ +  + i y+e +++ ++  ++e a
   mKIAA1475   432    GSRLDARQLIPALVNYSQggEAQQVSQAIRYMEFCVNvLG--ETEQA 476  

                   lqnlLieayiksdpqkemerlealaknlknn....nyDiekvarlcekak
                   ++n L+ +y++  p +++++le     ++ ++++ +yD +   rlc +++
   mKIAA1475   477 IHNYLLSLYARGQPASLLAYLE----QAGASphrvHYDLKYALRLCAEHG 522  

                   lyFweeAfllykkDlsnfkdaivtlielieagnyqravdya.....vkrn
                    +  ++ +  yk  l+++++a+++++      +++ a+++a+ +++++ +
   mKIAA1475   523 HH--RACVHVYKV-LELYEEAVDLALQV----DVDLAKQCAdlpeeDEEL 565  

                   npelwaevlkacldkkrflla<-*
                     +lw +++ + ++++++      
   mKIAA1475   566 RKKLWLKIARHVVQEEEDVQT    586  

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