hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj34038/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1474  ( 1050 res)   mfj34038

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     69.8    3.4e-16   5
HOX      Homeodomain                                     27.4    0.00047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/5     183   207 ..     1    23 []    16.4        4
ZnF_C2H2   2/5     244   268 ..     1    23 []    21.9    0.088
ZnF_C2H2   3/5     355   379 ..     1    23 []    14.0      8.3
HOX        1/1     859   933 ..     1    63 []    27.4  0.00047
ZnF_C2H2   4/5     945   967 ..     1    23 []    12.6       12
ZnF_C2H2   5/5    1010  1033 ..     1    23 []    26.0   0.0053

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 5, from 183 to 207: score 16.4, E = 4
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+  C+  + +  +L+ Hm ++ H   
   mKIAA1474   183    FRCKD-CSAAYDTLvELTVHMNetGH    207  

ZnF_C2H2: domain 2 of 5, from 244 to 268: score 21.9, E = 0.088
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg sf s ++L  Hm +++H   
   mKIAA1474   244    LKCMY-CGHSFESLqDLSVHMIktKH    268  

ZnF_C2H2: domain 3 of 5, from 355 to 379: score 14.0, E = 8.3
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg s  + ++L+ Hm+ + H   
   mKIAA1474   355    LKCME-CGSSHDTLqELTAHMMvtGH    379  

HOX: domain 1 of 1, from 859 to 933: score 27.4, E = 0.00047
                   *->krrkRts.ftpeQleeLEkeFeknp...........YPsreereeLA
                      kr+ R+s+++p+ l +L++ F+ + +++++++   + +s++er +++
   mKIAA1474   859    KRKGRQSnWNPQHLLILQAQFAASLrqtsegkyimsDLSPQERMHIS 905  

                   keLgLterqVkvWFQNRRakwkrqekkk<-*
                   + +gL+ + +  W  N  + ++r    k   
   mKIAA1474   906 RFTGLSMTTISHWLANVKYQLRRTGGTK    933  

ZnF_C2H2: domain 4 of 5, from 945 to 967: score 12.6, E = 12
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C  + ++++ ++ H+ +H   
   mKIAA1474   945    FFCND-CASQIRTPsTYISHLESH    967  

ZnF_C2H2: domain 5 of 5, from 1010 to 1033: score 26.0, E = 0.0053
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C+++f sk+a k H+ ++H   
   mKIAA1474  1010    YQCKL-CNRTFASKhAVKLHLSkTH    1033 

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