hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj34038/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1474  ( 1050 res)   mfj34038

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          68.7    1.3e-16   5
Homeobox Homeobox domain                                  0.5     0.0045   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/5     183   207 ..     1    24 []    20.4    0.042
zf-C2H2    2/5     244   268 ..     1    24 []    19.2    0.098
zf-C2H2    3/5     355   379 ..     1    24 []    11.1      8.3
Homeobox   1/1     861   928 ..     1    57 []     0.5   0.0045
zf-C2H2    4/5     945   967 ..     1    24 []    14.4      2.7
zf-C2H2    5/5    1010  1033 ..     1    24 []    23.6   0.0048

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 5, from 183 to 207: score 20.4, E = 0.042
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      ++C+ dC  ++ +  +L+ H++ ++H   
   mKIAA1474   183    FRCK-DCSAAYDTLVELTVHMNEtgH    207  

zf-C2H2: domain 2 of 5, from 244 to 268: score 19.2, E = 0.098
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                       kC  +Cg sF +  +L  H+ +++H   
   mKIAA1474   244    LKCM-YCGHSFESLQDLSVHMIKtkH    268  

zf-C2H2: domain 3 of 5, from 355 to 379: score 11.1, E = 8.3
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                       kC  +Cg s  +  +L++H+++++H   
   mKIAA1474   355    LKCM-ECGSSHDTLQELTAHMMVtgH    379  

Homeobox: domain 1 of 1, from 861 to 928: score 0.5, E = 0.0045
                   *->rrkRTtftpeQleeLEkeFq...........knrYPsreeReeLAkk
                      + +  +  p+ l++L++ F+ + +++++++   + +s++eR ++++ 
   mKIAA1474   861    KGRQSNWNPQHLLILQAQFAaslrqtsegkyIMSDLSPQERMHISRF 907  

                   LgLterqVkvWFQNRRaKwKk<-*
                   +gL+ + +  W  N ++  ++   
   mKIAA1474   908 TGLSMTTISHWLANVKYQLRR    928  

zf-C2H2: domain 4 of 5, from 945 to 967: score 14.4, E = 2.7
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ dC    +++s++ +Hl +H   
   mKIAA1474   945    FFCN-DCASQIRTPSTYISHLESH    967  

zf-C2H2: domain 5 of 5, from 1010 to 1033: score 23.6, E = 0.0048
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+  C+++F +k+  k Hl ++H   
   mKIAA1474  1010    YQCK-LCNRTFASKHAVKLHLSKtH    1033 

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