hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj02395/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1471  ( 801 res)   mtj02395

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PTPc     Protein tyrosine phosphatase, catalytic doma   132.9    3.5e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PTPc       1/1     608   801 .]     1   308 []   132.9  3.5e-35

Alignments of top-scoring domains:
PTPc: domain 1 of 1, from 608 to 801: score 132.9, E = 3.5e-35
                   *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi
                       l +++ +lq+++ +d+       +s+ +a+ +      KNR++ d+
   mKIAA1471   608    ALDAIWRELQEAQEHDAR-----GRSIAIARCYS----LKNRHQ-DV 644  

                   lpyDhtRVkLkppdgesdseegsDYINAnyidgy.kepkayIaTQGPLps
                   +pyD++RV+L +        + +DYINA+ ++g +++     aTQ+PLp+
   mKIAA1471   645 MPYDSNRVVLRS--------GKDDYINASCVEGLsPYCPPLVATQAPLPG 686  

                   TveDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee...s
                   T +DFW MV eqkv+vIVML+++ E+         + K a+Y+P e++++
   mKIAA1471   687 TAADFWLMVHEQKVSVIVMLVSEAEM--------EKQKVARYFPTErgqP 728  

                   ltyGditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyh
                   +++G ++V l s  +++   + R+l++++ ++        s +r++ h+h
   mKIAA1471   729 MVHGALSVALSSIRTTE-THVERVLSLQFRDQ--------SLKRSLVHLH 769  

                   ytnWPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtsps
                   +++WP++g P+sp  ll+f+++v++++ ++++                  
   mKIAA1471   770 FPTWPELGLPDSPGNLLRFIQEVHAHYLHQRP------------------ 801  

                   gPivVHCSAGvGRTGTFiaidillqqleavdifdiVkelRsqRpgmVQTe
                                                                     
   mKIAA1471     - -------------------------------------------------- -    

                   eQYiFlyraileylk<-*
                                     
   mKIAA1471     - ---------------    -    

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