hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtj/mtj02395/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1471 ( 801 res) mtj02395 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Y_phosphatase Protein-tyrosine phosphatase 128.3 1.4e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Y_phosphatase 1/1 635 801 .] 1 275 [] 128.3 1.4e-34 Alignments of top-scoring domains: Y_phosphatase: domain 1 of 1, from 635 to 801: score 128.3, E = 1.4e-34 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAnyidgpivrllvv KNR++d+ pyD++RV+L + +DYINA+ ++g + mKIAA1471 635 YSLKNRHQDVMPYDSNRVVLR----SGKDDYINASCVEG-------L 670 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC +++++ aTQ+Plp T +DFW Mv eqkv+vIVML ++ E+++ +K mKIAA1471 671 SPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAEMEK--QK-V 717 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskila a+Y+P+ ++g+++++G ++V l s +++ + R+l+l++++ mKIAA1471 718 ARYFPT--ERGQPMVHGALSVALSSIRTTETHVERVLSLQFrDQ------ 759 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg + +r++ h+h+++WP+ g P+s p ll+++++v+ ++ mKIAA1471 760 -----SLKRSLVHLHFPTWPELGLPDS-PGNLLRFIQEVHAHYL------ 797 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf ++ + mKIAA1471 798 ------------------------------------------HQRP---- 801 diVkelRsqRpgmVQteeQYiFlydaile<-* mKIAA1471 - ----------------------------- - //