hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00114/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1470  ( 484 res)   mph00114

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RCC1     Regulator of chromosome condensation (RCC1)     76.6      5e-19   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RCC1       1/4     130   179 ..     1    68 []    35.7    1e-06
RCC1       2/4     182   231 ..     1    68 []    20.6    0.028
RCC1       3/4     234   307 ..     1    68 []    19.0    0.041
RCC1       4/4     312   361 ..     1    68 []     1.5      3.2

Alignments of top-scoring domains:
RCC1: domain 1 of 4, from 130 to 179: score 35.7, E = 1e-06
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                      +G++ s+G+  +e GqLG g +                P l+     
   mKIAA1470   130    EGKLWSWGR--NEKGQLGHGDTKRVE-----------APRLI----- 158  

                   ssslsekVvsvasGgqHtval<-*
                       +e+ v +a+G  Ht al   
   mKIAA1470   159 EALSHEAIVLAACGRNHTLAL    179  

RCC1: domain 2 of 4, from 182 to 231: score 20.6, E = 0.028
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                       G V+++G   +  GqLGlg   ++            +P+++     
   mKIAA1470   182    TGSVFAFGE--NKMGQLGLGNQTDAVP----------SPAQI----- 211  

                   ssslsekVvsvasGgqHtval<-*
                      +  +  + a+G+ +  +    
   mKIAA1470   212 -MYNGQPITKMACGAEFSMLM    231  

RCC1: domain 3 of 4, from 234 to 307: score 19.0, E = 0.041
                   *->dGrVYslGcFRgenGqLGl..geeveeskGGRqGLERLlvPvlvmLK
                       G +Ys+Gc   e+GqLG ++++   ++   R   +  lvP  v + 
   mKIAA1470   234    KGNLYSFGC--PEYGQLGHnsDGKFIAR-AQRIEYDCELVPRRVAIF 277  

                   srsssl.......sekVvsvasGgqHtval<-*
                     + + ++  + ++++V +va+G+ Ht +l   
   mKIAA1470   278 IEKTKDgqilpvpNVVVRDVACGANHTLVL    307  

RCC1: domain 4 of 4, from 312 to 361: score 1.5, E = 3.2
                   *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr
                        rV+s+G   g +G+LG  e  +e            vP lv  K  
   mKIAA1470   312    --RVFSWGF--GGYGRLGHAEQKDEM-----------VPRLV--KLF 341  

                   ssslsekVvsvasGgqHtval<-*
                    + +  +  +  +G    +a+   
   mKIAA1470   342 DFPGRGA-TQIYAGYTCSFAV    361  

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