hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00677/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1469  ( 663 res)   mbj00677

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    62.5    5.4e-14   7
LRRCT    Leucine rich repeat C-terminal domain           46.4    3.9e-09   1
LRRNT    Leucine rich repeat N-terminal domain           35.4    7.6e-06   1
LRR_PS   Leucine-rich repeat, plant-specific subfamil    25.5     0.0075   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRNT      1/1      44    76 ..     1    38 []    35.4  7.6e-06
LRR_PS     1/6      96   118 ..     1    24 []     8.8       85
LRR_TYP    1/7      96   119 ..     1    24 []     4.4  1.2e+02
LRR_TYP    2/7     141   166 ..     1    24 []     5.2       97
LRR_PS     2/6     168   189 ..     1    24 []     4.8  2.9e+02
LRR_TYP    3/7     170   190 ..     1    24 []     7.3       53
LRR_PS     3/6     212   232 ..     1    24 []    -0.1  1.3e+03
LRR_TYP    4/7     212   237 ..     1    24 []     7.7       48
LRR_PS     4/6     238   260 ..     1    24 []     5.6  2.2e+02
LRR_TYP    5/7     238   261 ..     1    24 []    11.7       15
LRR_TYP    6/7     262   283 ..     1    24 []    15.8      4.8
LRR_PS     5/6     261   283 ..     1    24 []     2.7  5.3e+02
LRR_PS     6/6     284   306 ..     1    24 []    19.8     0.38
LRR_TYP    7/7     284   307 ..     1    24 []    28.5  0.00094
LRRCT      1/1     319   370 ..     1    55 []    46.4  3.9e-09

Alignments of top-scoring domains:
LRRNT: domain 1 of 1, from 44 to 76: score 35.4, E = 7.6e-06
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                       CP  C+C    +  ++C +r+Lt  ++P+++P+d+t    
   mKIAA1469    44    SCPSVCRCD---AGFIYCNDRSLT--SIPVGIPEDATT    76   

LRR_PS: domain 1 of 6, from 96 to 118: score 8.8, E = 85
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L + q+++L++N+L  e+P++l +   
   mKIAA1469    96    LLKVQRIYLYHNSLD-EFPTNLPK    118  

LRR_TYP: domain 1 of 7, from 96 to 119: score 4.4, E = 1.2e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L + ++ +L +N L + P ++      
   mKIAA1469    96    LLKVQRIYLYHNSLDEFPTNLPKY    119  

LRR_TYP: domain 2 of 7, from 141 to 166: score 5.2, E = 97
                   *->LpnLreLdLsnNqLtsLP..pgaFqg<-*
                       p L+eL+L++N  +++  ++gaF++   
   mKIAA1469   141    IPYLEELHLDDNSVSAVSieEGAFRD    166  

LRR_PS: domain 2 of 6, from 168 to 189: score 4.8, E = 2.9e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                        +L+ L Ls N+Ls +IP  l +   
   mKIAA1469   168    -NYLRLLFLSRNHLS-TIPGGLPR    189  

LRR_TYP: domain 3 of 7, from 170 to 190: score 7.3, E = 53
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                         Lr L Ls+N+L+++P g+ +    
   mKIAA1469   170    ---LRLLFLSRNHLSTIPGGLPRT    190  

LRR_PS: domain 3 of 6, from 212 to 232: score -0.1, E = 1.3e+03
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      LtsL++L L +N L+      lg+   
   mKIAA1469   212    LTSLKRLVLDGNLLNN---HGLGD    232  

LRR_TYP: domain 4 of 7, from 212 to 237: score 7.7, E = 48
                   *->LpnLreLdLsnNqL..tsLPpgaFqg<-*
                      L++L++L L++N L++  L + +F +   
   mKIAA1469   212    LTSLKRLVLDGNLLnnHGLGDKVFFN    237  

LRR_PS: domain 4 of 6, from 238 to 260: score 5.6, E = 2.2e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L +L++L L  N+L+   P +l     
   mKIAA1469   238    LVNLTELSLVRNSLT-AAPVNLPG    260  

LRR_TYP: domain 5 of 7, from 238 to 261: score 11.7, E = 15
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL+eL+L +N Lt+ P ++ +    
   mKIAA1469   238    LVNLTELSLVRNSLTAAPVNLPGT    261  

	[output cut off at A = 10 top alignments]
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