hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06319/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1466  ( 921 res)   mbg06319

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RnaseH   RNase H                                        202.0    8.9e-57   1
rve      Integrase core domain                          171.7    1.2e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RnaseH     1/1     356   502 ..     1   164 []   202.0  8.9e-57
rve        1/1     626   781 ..     1   175 []   171.7  1.2e-47

Alignments of top-scoring domains:
RnaseH: domain 1 of 1, from 356 to 502: score 202.0, E = 8.9e-57
                   *->pea.vtvYTDGSsngnpgtGgAGyGvlrdrggkekqrskplpggtTn
                      p+a++t+YTDGSs+ ++g ++AG++v+ +++ +  +++k+lp gt++
   mKIAA1466   356    PDAdHTWYTDGSSFLQEGQRRAGAAVTTETE-V--IWAKALPAGTSA 399  

                   QrAEllAlieALelalKsgiqkvnIyTDSqYvf.taH.iggitewlhgWk
                   QrAEl+Al +AL++a  +g +k+n+yTDS+Y+f taH +g i++      
   mKIAA1466   400 QRAELIALTQALKMA--EG-KKLNVYTDSRYAFaTAHvHGEIYR------ 440  

                   kngwptlkGseskpiknk.eiwellkallkrkekPvyiqwVpGHqkGiPg
                     ++++l+ se+k+iknk+ei++llkal++ +++   i+++pGHqkG++ 
   mKIAA1466   441 --RRGLLT-SEGKEIKNKgEILALLKALFL-PKR-LSIIHCPGHQKGNSA 485  

                   plaeqpqGNelADkLAkqgas<-*
                   ++    +GN +AD++A+++a+   
   mKIAA1466   486 EA----KGNRMADQAAREAAM    502  

rve: domain 1 of 1, from 626 to 781: score 171.7, E = 1.2e-47
                   *->r.srpnelwqiDitGplpvktkggkkyllvivDdfSrfivayplksk
                      r++rp+ +w+iD+t  +++  +g +kyllv+vD+fS++++a+p+k++
   mKIAA1466   626    RgHRPGTHWEIDFT-KVKPGLYG-YKYLLVFVDTFSGWVEAFPTKHE 670  

                   ssaetvlalleaalerrggkkgrpvdwgkpkiihsDnGseftskarepvn
                   +++ ++++lle  +  r+g+         p ++ +DnG++f+s+      
   mKIAA1466   671 TAKIVTKKLLE-EIFPRFGM---------PQVLGTDNGPAFVSQ------ 704  

                   tafqeflkelGIkhsfsrpynPqdNGvvERfnrtLkeelrkllrf.slee
                      q+ +k lGI ++++++y+Pq+ G+vER+nrt+ke l kl+  +  ++
   mKIAA1466   705 -VSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAtGTRD 753  

                   weeal.talylyNrrrrhsllggltPaerla<-*
                   w+ +l+ aly+  +++ +  +g  tP+e+l+   
   mKIAA1466   754 WVLLLpLALYRARNTPGP--HGL-TPYEILY    781  

//