hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00439/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1465  ( 785 res)   mfj00439

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    58.1    1.1e-12   4
LRRCT    Leucine rich repeat C-terminal domain           55.7      6e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_TYP    1/4      89   113 ..     1    24 []    13.4      9.7
LRR_TYP    2/4     138   161 ..     1    24 []    10.5       22
LRR_TYP    3/4     162   185 ..     1    24 []    19.9     0.36
LRR_TYP    4/4     186   209 ..     1    24 []    27.5   0.0019
LRRCT      1/1     221   271 ..     1    55 []    55.7    6e-12

Alignments of top-scoring domains:
LRR_TYP: domain 1 of 4, from 89 to 113: score 13.4, E = 9.7
                   *->LpnL.reLdLsnNqLtsLPpgaFqg<-*
                      Lp+  ++L+Ls N++t L +gaF +   
   mKIAA1465    89    LPANvTTLSLSANKITVLRRGAFVN    113  

LRR_TYP: domain 2 of 4, from 138 to 161: score 10.5, E = 22
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+ LdLs+N ++  P   +++   
   mKIAA1465   138    LSQLKNLDLSHNLISNFPWSDLRN    161  

LRR_TYP: domain 3 of 4, from 162 to 185: score 19.9, E = 0.36
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+ L  ++N+L sLP++a++    
   mKIAA1465   162    LSALQLLKMNHNRLGSLPRDALGA    185  

LRR_TYP: domain 4 of 4, from 186 to 209: score 27.5, E = 0.0019
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp Lr+L+ +nN+L++L pg+F+    
   mKIAA1465   186    LPDLRSLRINNNRLRTLEPGTFDA    209  

LRRCT: domain 1 of 1, from 221 to 271: score 55.7, E = 6e-12
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NPf+C+C+L wL+ w    +++ l++p+ s+ CasP++l+G p+ +l
   mKIAA1465   221    NPFHCSCGLVWLQAWAAS-TRVSLPEPD-SIACASPPELQGVPVHRL 265  

                   lpsefsCp<-*
                   +    +C    
   mKIAA1465   266 P--ALPCA    271  

//