hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01572/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1461  ( 1753 res)   mbg01572

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBD      Methyl-CpG binding domain                       16.3      0.017   1
PWWP     PWWP domain                                      5.7     0.0087   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBD        1/1      36   109 ..     1   118 []    16.3    0.017
PWWP       1/1    1641  1704 ..     1    87 []     5.7   0.0087

Alignments of top-scoring domains:
MBD: domain 1 of 1, from 36 to 109: score 16.3, E = 0.017
                   *->krtkredrlpLppGWrRetvqRksGssanNnngkfDvyYysPvtGkk
                       ++        p GW+R++               + v Y+sP +G  
   mKIAA1461    36    DKEGGLAAIQVPVGWQRRV-------------DHNGVLYISP-SGSL 68   

                   fRsksevirYLgkngdsrkayldaesrtdlhSedrradsrrkrlkklnkK
                   ++   +v+ YL + g+                                +K
   mKIAA1461    69 LSCLDQVKTYLLTDGT--------------------------------CK 86   

                   gk..vtslkledFdFttrlevgr<-*
                   ++ +++ ++++ F+F+++  v +   
   mKIAA1461    87 CGleCPLILPKVFNFDPGAAVKQ    109  

PWWP: domain 1 of 1, from 1641 to 1704: score 5.7, E = 0.0087
                   *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkrimTqeaksn
                       f+ gDLVw+ +kG  +WP++ i+  ++ +s                
   mKIAA1461  1641    TFNVGDLVWGQIKGLTSWPGKFIREDDVHNSCQQ------------- 1674 

                   lykVlFFgdhktrawvskkklkPlldqdidkfkkdekrKg<-*
                           +++  + v ++klk l ++ ++++++ +kr+    
   mKIAA1461  1675 --------SPEE-GKVEPEKLKTL-TEGLEAYSRVRKRSR    1704 

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