hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg15126/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1457 ( 1364 res) mbg15126 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IP_trans Phosphatidylinositol transfer protein 611.9 3.8e-180 1 DDHD DDHD domain 325.3 6.8e-94 1 LNS2 LNS2 (Lipin/Ned1/Smp2) 252.1 7.4e-72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IP_trans 1/1 30 282 .. 1 256 [] 611.9 3.8e-180 DDHD 1/1 730 978 .. 1 267 [] 325.3 6.8e-94 LNS2 1/1 1123 1254 .. 1 159 [] 252.1 7.4e-72 Alignments of top-scoring domains: IP_trans: domain 1 of 1, from 30 to 282: score 611.9, E = 3.8e-180 *->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP m iKEYri+LP++vdEY++aQLYmi+kkSr+e+hG+gsGVEil N+P mKIAA1457 30 MIIKEYRIPLPMTVDEYRIAQLYMIQKKSRNETHGQGSGVEILENRP 76 YedgPGgkGQYThKiYHvgskiPawirmllPkgALevhEeawnAYPytrT Y+dgPGg+GQYThK+YHvg +iP+w+r++lPk+AL v Ee+wnAYPytrT mKIAA1457 77 YTDGPGGSGQYTHKVYHVGMHIPGWFRSILPKAALRVVEESWNAYPYTRT 126 rytcpymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidyiDivkr r tcp +vekFsi+iET+yk D G +NVfnLs+ +k++ i d iDivk mKIAA1457 127 RFTCP-FVEKFSIDIETFYKTDTGENNNVFNLSPVEKSQLITDIIDIVK- 174 dqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelaktgdlplMcAYKLc d+v + +Yk eEDPklf+SvkT RGPL+++W +e+ k+ lp+McAYKLc mKIAA1457 175 DPVPPSEYKTEEDPKLFQSVKTCRGPLSENWIQEYKKRL-LPIMCAYKLC 223 kVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWtdLtmeDIRr kVeFryWG+Q+k+E+FIhd +lrrvm+raHRQawcWqDeW +Ltme IR+ mKIAA1457 224 KVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRE 273 LEeetareL<-* LE+e +++L mKIAA1457 274 LEREVQLML 282 DDHD: domain 1 of 1, from 730 to 978: score 325.3, E = 6.8e-94 *->LdFkvenfFaiGSPlGlfltiRgtkiGDRPEFPnldslDllvsrpaC +dF++ ++F++G+PlGl+l++R+t +++slD++++rpaC mKIAA1457 730 FDFEIADLFLFGCPLGLVLALRKT---------VIPSLDVFQLRPAC 767 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep +q+YN+FHP+DP A+RLEPL++++f+ +++P++Ip+y++++ Lg+++s++ mKIAA1457 768 QQVYNLFHPADPSASRLEPLLERRFH-SLPPFSIPRYQRYP-LGDGCSTL 815 ltrviadlpqnflsnlqssikstnvltaasgasrkneeeteevkestars l++v++++++ f++++++s+++t ++a++g +r+++e++ ++ s+ mKIAA1457 816 LADVLQTHNTVFQEHAAPSSPGT--APAGRG-FRRASEISIASQVSG--- 859 GCSPRmTpapeqtenltemliareeravesqpssfsrdSiedek...... ++e++t+++ia+ + +S + + ++ + mKIAA1457 860 -----------MAESYTASSIAQK-----------GPSSLNHTPsirrls 887 ..................ktvaenietakeaskeehlaekvlmskLngtk +++++++++++ + v n e a+ +++l ++ ++k++g+k mKIAA1457 888 llalpppspttqgpraraRQVSPNLERAPC---LPDLDIGEVAAKWWGQK 934 RIDYvLqePaallafnsYlsalksHasYWeSeDvAlFlLkeiyr<-* RIDY+L++P+al+af+++++++++HasYWeS+Dv++FlL++++r mKIAA1457 935 RIDYALYCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQVMR 978 LNS2: domain 1 of 1, from 1123 to 1254: score 252.1, E = 7.4e-72 *->vViSDIDGTITkSDvLGHvlpiiGkDPWthaGVadLyrkiqenGYkI vV+S IDG++++S ++i+G+DP+++aG++d++r++q++GY+I mKIAA1457 1123 VVFS-IDGSFAAS------VSIMGSDPKVRAGAVDVVRHWQDLGYLI 1162 iYLTaRaiGQadrTrsYLsqvkQdGknLPdGpViLSPdrlfaALkREvIe iY+T+R+++Q++r++++L+q+ n+P+G+V+++ ++++ mKIAA1457 1163 IYVTGRPDMQKQRVVAWLAQH-----NFPHGVVSFC----------DGLV 1197 kkPeeFKiacLrdIrnlFppdngnpFyAGFGNritDvisYraVgvppsrI ++P+++K+ +L+ ++++ +++ +A++G++ +Dv++Y++++++p++I mKIAA1457 1198 HDPLRHKANFLKLLISE----LHLRAHAAYGST-KDVAVYNSISLSPMHI 1242 FtInpkgevhqe<-* +++++ ++++q+ mKIAA1457 1243 YIVGRPTKKLQQ 1254 //