hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00055/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1455  ( 1828 res)   mbg00055

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
YD_repeat_2x YD_repeat_2x: YD repeat (two copies)        78.1    1.9e-19   6

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
YD_repeat_2x   1/6     676   717 ..     1    42 []    14.5        2
YD_repeat_2x   2/6     740   781 ..     1    42 []    25.7   0.0011
YD_repeat_2x   3/6     952   992 ..     1    42 []    20.5    0.041
YD_repeat_2x   4/6    1261  1302 ..     1    42 []     9.4       23
YD_repeat_2x   5/6    1336  1378 ..     1    42 []    10.1       17
YD_repeat_2x   6/6    1404  1445 ..     1    42 []     1.9  8.4e+02

Alignments of top-scoring domains:
YD_repeat_2x: domain 1 of 6, from 676 to 717: score 14.5, E = 2
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y+++++++++td +g+t r   d     v++ +pd+++  l+   
   mKIAA1455   676    YSNDNDVTAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLT    717  

YD_repeat_2x: domain 2 of 6, from 740 to 781: score 25.7, E = 0.0011
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      +++ g l++  d+ g+tt ++yd++grl+ +t p g +t l+   
   mKIAA1455   740    HGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLH    781  

YD_repeat_2x: domain 3 of 6, from 952 to 992: score 20.5, E = 0.041
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      y+  g+++++        +++yd++gr+v++  +dg+++s++   
   mKIAA1455   952    YSSTGQIASIQRGTT-SEKVDYDSQGRIVSRVFADGKTWSYT    992  

YD_repeat_2x: domain 4 of 6, from 1261 to 1302: score 9.4, E = 23
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      yd +g+l ++   +   +ry+yd  g+l   +   + +       
   mKIAA1455  1261    YDVDGQLQTVYLNEKIMWRYNYDLNGNLHLLNPSSSARLTPL    1302 

YD_repeat_2x: domain 5 of 6, from 1336 to 1378: score 10.1, E = 17
                   *->ydaagrllgstdpd.gtttrytydaagrlveetdpdggstsle<-*
                      y+  g l+++   ++g+t+ y yd++gr+v+  +  g+  ++    
   mKIAA1455  1336    YSSKGLLTRVYSKGsGWTVIYRYDGLGRRVSSKTSLGQHLQFF    1378 

YD_repeat_2x: domain 6 of 6, from 1404 to 1445: score 1.9, E = 8.4e+02
                   *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-*
                      yd +g+l +    +g     + d  g  +++ + +g   +     
   mKIAA1455  1404    YDLQGHLFAMEISSGDEFYIASDNTGTPLAVFSSNGLMLKQI    1445 

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