hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00055/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1455  ( 1828 res)   mbg00055

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
RHS_repeat RHS Repeat                                    55.6    1.1e-12   6
NHL        NHL repeat                                    42.2    1.2e-08   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
NHL          1/5     294   322 ..     1    29 []     0.8       79
NHL          2/5     412   437 ..     1    29 []     3.7       33
NHL          3/5     471   497 ..     1    29 []    14.6      1.4
NHL          4/5     531   558 ..     1    29 []     0.9       75
NHL          5/5     600   627 ..     1    29 []    22.1    0.013
RHS_repeat   1/6     676   713 ..     1    44 []    11.8      9.1
RHS_repeat   2/6     739   777 ..     1    44 []    12.7      6.8
RHS_repeat   3/6     952   988 ..     1    44 []    10.4       14
RHS_repeat   4/6    1057  1095 ..     1    44 []     5.0       68
RHS_repeat   5/6    1282  1320 ..     1    44 []    13.0      6.3
RHS_repeat   6/6    1336  1374 ..     1    44 []    20.2    0.049

Alignments of top-scoring domains:
NHL: domain 1 of 5, from 294 to 322: score 0.8, E = 79
                   *->lnrPhGvavdpsdGrvyVaD.senhrvqvf<-*
                      l  P  +a +  dG +yV D ++  r++     
   mKIAA1455   294    LLAPVALACG-IDGSLYVGDfNYVRRIFPS    322  

NHL: domain 2 of 5, from 412 to 437: score 3.7, E = 33
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      l +P G a+d ++G +y +D     +++    
   mKIAA1455   412    LMSPKGMAID-KNGLIYFVD--GTMIRKV    437  

NHL: domain 3 of 5, from 471 to 497: score 14.6, E = 1.4
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      l  P+++a++p d+ +yV D  n+ v ++   
   mKIAA1455   471    LEWPTDLAINPMDNSIYVLD--NNVVLQI    497  

NHL: domain 4 of 5, from 531 to 558: score 0.9, E = 75
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      l + + +av+  +G +y+++++  ++  +   
   mKIAA1455   531    LESATAIAVS-YSGVLYITETDEKKINRI    558  

NHL: domain 5 of 5, from 600 to 627: score 22.1, E = 0.013
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      ln P+++a + +dG++y+aD +n r++     
   mKIAA1455   600    LNAPSSLAAS-PDGTLYIADLGNIRIRAV    627  

RHS_repeat: domain 1 of 6, from 676 to 713: score 11.8, E = 9.1
                   *->YDadGrLtavtdpsggvgttyrYDaaGrltaltlttstdagGrt<-*
                      Y+ d ++tavtd++g+++ + r D+ ++++++       ++ ++   
   mKIAA1455   676    YSNDNDVTAVTDSNGNTL-RIRRDPNRMPVRV-----VSPDNQV    713  

RHS_repeat: domain 2 of 6, from 739 to 777: score 12.7, E = 6.8
                   *->YDadGrLtavt.dpsggvgttyrYDaaGrltaltlttstdagGrt<-
                      Y  +  L+a+ +d +g ++  + YD++Grlt +     t + G++  
   mKIAA1455   739    YHGNSGLLATKsDETGWTT-FFDYDSEGRLTNV-----TFPTGVV   777  

                   *
                    
   mKIAA1455     -   -    

RHS_repeat: domain 3 of 6, from 952 to 988: score 10.4, E = 14
                   *->YDadGrLtavtdpsggvgt.tyrYDaaGrltaltlttstdagGrt<-
                      Y+++G++ +      g++ +   YD++Gr++++       a+G+t  
   mKIAA1455   952    YSSTGQIAS---IQRGTTSeKVDYDSQGRIVSR-----VFADGKT   988  

                   *
                    
   mKIAA1455     -   -    

RHS_repeat: domain 4 of 6, from 1057 to 1095: score 5.0, E = 68
                   *->YDadGrLtavt.dpsggvgttyrYDaaGrltaltlttstdagGrt<-
                      Y++ G L+++    + +++  + Y  + rl ++      + + r+  
   mKIAA1455  1057    YNEEGLLLQTAfLGTSRRV-LFKYRRQTRLSEI-----LYDSTRV   1095 

                   *
                    
   mKIAA1455     -   -    

RHS_repeat: domain 5 of 6, from 1282 to 1320: score 13.0, E = 6.3
                   *->YDadGrLtavtdpsggvgtt.yrYDaaGrltaltlttstdagGrt<-
                      YD +G+L    ++s +++ t++rYD ++r+t+l      d + r   
   mKIAA1455  1282    YDLNGNLHLLNPSSSARL-TpLRYDLRDRITRL-----GDVQYRL   1320 

                   *
                    
   mKIAA1455     -   -    

RHS_repeat: domain 6 of 6, from 1336 to 1374: score 20.2, E = 0.049
                   *->YDadGrLtavtdpsggvgt.tyrYDaaGrltaltlttstdagGrt<-
                      Y++ G Lt v+ + g  +t  yrYD++Gr++++      +  G+   
   mKIAA1455  1336    YSSKGLLTRVY-SKGSGWTvIYRYDGLGRRVSS-----KTSLGQH   1374 

                   *
                    
   mKIAA1455     -   -    

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