hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj11062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1454  ( 1393 res)   mfj11062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_U1   U1-like zinc finger                             30.5    0.00023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_U1     1/1     783   817 ..     1    37 []    30.5  0.00023

Alignments of top-scoring domains:
ZnF_U1: domain 1 of 1, from 783 to 817: score 30.5, E = 0.00023
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                       +++ C+lCnv +  +e+ + ++H+kGkkH++ v++    
   mKIAA1454   783    ERKKQCSLCNVLIA-SEVYL-FSHIKGKKHQQAVREN    817  

//