hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej00722/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1452  ( 715 res)   mej00722

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sin_N    Sin-like protein conserved region              973.7   4.7e-289   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sin_N      1/1       9   439 ..     1   481 []   973.7 4.7e-289

Alignments of top-scoring domains:
Sin_N: domain 1 of 1, from 9 to 439: score 973.7, E = 4.7e-289
                   *->EEDDSveDpVVrEiDVfLakSlDanteLYvlQYPlRsswrDpYdlDe
                      EED    DpV++EiDV+LakSl  +++LY++QYP+R++++ +Yd D+
   mKIAA1452     9    EED----DPVIQEIDVYLAKSL--AEKLYLFQYPVRPASM-TYD-DI 47   

                   rceevrvkPsaqevEvdlaiDtesknYDrkKgEqfalnvDGKntYGAvpk
                   +++++++kP++q+vE+++aiDt+++nY+r+KgEq+alnvD     GA+++
   mKIAA1452    48 PHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVD-----GACAD 92   

                   KGkGvealtykkkImdkqAFvssstivdvAkYAVGiFkgdelHLnPLhai
                        e++ty++k+mdkq+F+ss+t++++A+YA+++++++elHL+PLh+i
   mKIAA1452    93 -----ETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQGELHLTPLHGI 137  

                   vQLRPSlqhLdKdDkKkkeeEsakkaedsStdEAEedVKPSskqVtVkFS
                   +QLRPS+++LdK+D+K++e+E+a++a+dsS+dEAEedV    kq+tV+FS
   mKIAA1452   138 LQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDV----KQITVRFS 183  

                   RpesekqGKekrPVgsaetlqKkIAeEpWvelkyhgLkdsrseleaqkLl
                   Rpese++ +++r V+s+e+lqKk+AeEpWv+l+y+g++dsrse+e+q+Ll
   mKIAA1452   184 RPESEQA-RQRR-VQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLL 231  

                   glssnGsesidLllDsPeeYlmkllaPvkrkiiggvKdiGelvaeSesve
                   +++s+G+e+++L++ sP+eYlm+l++P++++    +Kd  ++va+S+ v+
   mKIAA1452   232 CQGSSGVENTELVK-SPSEYLMMLMPPSPEE----EKD--KPVAPSN-VL 273  

                   pvykKarLksLPlaelqlkvlmvkspvikfsdllslLapsaDpevsaDkv
                   ++   a+L++LPla+ q+kvlm++++v++f++l+slL+ps+ ++v+   v
   mKIAA1452   274 SM---AQLRTLPLAD-QIKVLMKNVKVMPFANLMSLLGPSV-DSVA---V 315  

                   LavLkevAsLVQGlWVpKSellfPkdlasahsgvpGKtDLYRAEllvrAR
                   L+++++vA+LVQG+WV+KS++l+Pkd++s+hsg+p       AE+l+r+R
   mKIAA1452   316 LRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMP-------AEVLCRGR 358  

                   DyvLylFsqstrvvrkeVmAvtklsekdvedvLktfAverealkdWkLkl
                   D+v+++F+qs++vvrkeV+Avtkl+++dv+d+L+++Av+r ++k+W+++l
   mKIAA1452   359 DFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVR-INKGWEFLL 407  

                   ppDkeFiEDkkYpevVkeQealWtqkeeeLekvl<-*
                   p+D+eFi  kk+p+vV++Q++lW++++++Lekv+   
   mKIAA1452   408 PYDLEFI--KKHPDVVQRQHMLWSGIQAKLEKVY    439  

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