hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03116/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1449  ( 675 res)   mbg03116

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   189.1    4.1e-52   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      13    57 ..     1    46 []    18.9     0.49
WD40       2/7      63   102 ..     1    46 []    39.8  3.7e-07
WD40       3/7     105   144 ..     1    46 []    37.1  2.4e-06
WD40       4/7     156   195 ..     1    46 []    31.8  9.7e-05
WD40       5/7     198   237 ..     1    46 []    39.4  4.9e-07
WD40       6/7     240   279 ..     1    46 []    28.7  0.00078
WD40       7/7     349   387 ..     1    46 []     3.2  1.6e+02

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 13 to 57: score 18.9, E = 0.49
                   *->t.kllrtlk.....gHtgespVtsvafspdggssdspnllasgs.Dg
                      + ++ ++++++ ++  ++  +V++++ +p        n+l+++++D+
   mKIAA1449    13    KvQVSYVIRdevekYNRN--GVNALQLDPAL------NRLFTAGrDS 51   

                   tirlWd<-*
                    ir+W+   
   mKIAA1449    52 IIRIWS    57   

WD40: domain 2 of 7, from 63 to 102: score 39.8, E = 3.7e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +++++ Ht+  +V++v  + +g      + l+s+s+D t+++W
   mKIAA1449    63    QdPYIASMEHHTD--WVNDVVLCCNG------KTLISASsDTTVKVW 101  

                   d<-*
                   +   
   mKIAA1449   102 N    102  

WD40: domain 3 of 7, from 105 to 144: score 37.1, E = 2.4e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ + +tl+ H++  +V ++a+  d       +l+as++ D++i lW
   mKIAA1449   105    KgFCMSTLRTHKD--YVKALAYAKDK------ELVASAGlDRQIFLW 143  

                   d<-*
                   d   
   mKIAA1449   144 D    144  

WD40: domain 4 of 7, from 156 to 195: score 31.8, E = 9.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +++l+g ++  +++s+a ++ g      ++++sgs+ + +r+W
   mKIAA1449   156    NtVTTSSLSGNKD--SIYSLAMNQLG------TIIVSGStEKVLRVW 194  

                   d<-*
                   d   
   mKIAA1449   195 D    195  

WD40: domain 5 of 7, from 198 to 237: score 39.4, E = 4.9e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t   l++lkgHt+   V ++  + dg      ++ +sgs+DgtirlW
   mKIAA1449   198    TcAKLMKLKGHTD--NVKALLLHRDG------TQCLSGSsDGTIRLW 236  

                   d<-*
                       
   mKIAA1449   237 F    237  

WD40: domain 6 of 7, from 240 to 279: score 28.7, E = 0.00078
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++++t++ H+   +V+++++++        ++++sg++D++i++ 
   mKIAA1449   240    QqRCIATYRVHDE--GVWALQVNDAF------THVYSGGrDRKIYCT 278  

                   d<-*
                   d   
   mKIAA1449   279 D    279  

WD40: domain 7 of 7, from 349 to 387: score 3.2, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++ +++k   +  ++  + +  d       +++++ ++++++  W
   mKIAA1449   349    CtQPDQVIK-GGA--SIIQCHILNDK------RHILTKDtNNNVAYW 386  

                   d<-*
                   d   
   mKIAA1449   387 D    387  

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