hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03116/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1449  ( 675 res)   mbg03116

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       167.1      3e-46   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      20    57 ..     1    38 []    17.0     0.46
WD40       2/7      65   102 ..     1    38 []    37.7  2.7e-07
WD40       3/7     107   144 ..     1    38 []    33.7  4.1e-06
WD40       4/7     158   195 ..     1    38 []    27.3  0.00036
WD40       5/7     200   237 ..     1    38 []    34.2    3e-06
WD40       6/7     242   279 ..     1    38 []    19.7    0.071
WD40       7/7     351   387 ..     1    38 []     2.9       89

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 20 to 57: score 17.0, E = 0.46
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                          v +   ++V+++  +p   ++l++++rD  i+iW+   
   mKIAA1449    20    IRDEVEkYNRNGVNALQLDPA-LNRLFTAGRDSIIRIWS    57   

WD40: domain 2 of 7, from 65 to 102: score 37.7, E = 2.7e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +a+ ++Ht++V++v  + + g++l+s+S+D t+k+W+   
   mKIAA1449    65    PYIASMeHHTDWVNDVVLCCN-GKTLISASSDTTVKVWN    102  

WD40: domain 3 of 7, from 107 to 144: score 33.7, E = 4.1e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       c ++l+ H++ V ++a++ d  +l+as++ D+ i +Wd   
   mKIAA1449   107    FCMSTLrTHKDYVKALAYAKD-KELVASAGLDRQIFLWD    144  

WD40: domain 4 of 7, from 158 to 195: score 27.3, E = 0.00036
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++l+g +++++++a ++  g++++sgS  + +++Wd   
   mKIAA1449   158    VTTSSLsGNKDSIYSLAMNQL-GTIIVSGSTEKVLRVWD    195  

WD40: domain 5 of 7, from 200 to 237: score 34.2, E = 3e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        l  l+gHt+ V ++  + d g++++sgS+Dgti++W    
   mKIAA1449   200    AKLMKLkGHTDNVKALLLHRD-GTQCLSGSSDGTIRLWF    237  

WD40: domain 6 of 7, from 242 to 279: score 19.7, E = 0.071
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       c+a+++ H  +V+++ ++    +++ sg+rD++i+  d   
   mKIAA1449   242    RCIATYrVHDEGVWALQVNDA-FTHVYSGGRDRKIYCTD    279  

WD40: domain 7 of 7, from 351 to 387: score 2.9, E = 89
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +v++g  +++  + +  d  +++++   ++++  Wd   
   mKIAA1449   351    QPDQVIkGG-ASIIQCHILND-KRHILTKDTNNNVAYWD    387  

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