hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02187/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1445  ( 632 res)   mph02187

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP_1    Thrombospondin type 1 domain                   153.2    4.6e-42   5
PSI      Plexin repeat                                   61.5    1.9e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1      36    83 ..     1    63 []    61.5  1.9e-14
TSP_1      1/5     149   200 ..     1    55 []    56.3  6.5e-13
TSP_1      2/5     207   251 ..     1    55 []    29.3  9.1e-05
TSP_1      3/5     338   388 ..     1    55 []    46.6  5.6e-10
TSP_1      4/5     395   445 ..     1    55 []    34.8  1.9e-06
TSP_1      5/5     450   490 ..     1    55 []    17.0   0.0037

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 36 to 83: score 61.5, E = 1.9e-14
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCpraep
                      +Cs+y s ++CL+ardp yCgW++ ++ C++ +       ++++++ 
   mKIAA1445    36    RCSAYHSQGACLGARDP-YCGWDGKRQLCSTLE-------DSSNMS- 73   

                   endqwldwswssskCp<-*
                          w++   +Cp   
   mKIAA1445    74 ------LWIQNITTCP    83   

TSP_1: domain 1 of 5, from 149 to 200: score 56.3, E = 6.5e-13
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                      + Ws W +CS +CG G ++RqR+c +paP+ +gg  C+g+ +e   +
   mKIAA1445   149    TAWSSWAQCSTSCGIGFQVRQRSCSNPAPR-HGGRICVGKSRE--ER 192  

                   aCdmmdkC<-*
                    C++  +C   
   mKIAA1445   193 FCNENTPC    200  

TSP_1: domain 2 of 5, from 207 to 251: score 29.3, E = 9.1e-05
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                        W+ WS CS  CG+G+++R+R+c +       g++C+g  +e  ++
   mKIAA1445   207    ASWGSWSKCSNNCGGGVQSRRRSCEN-------GNSCPGCGVE--FK 244  

                   aCdmmdkC<-*
                    C + + C   
   mKIAA1445   245 TC-NPEAC    251  

TSP_1: domain 3 of 5, from 338 to 388: score 46.6, E = 5.6e-10
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                        W++WS+CS  C  G r+R+R+c +p+P+  gg pC+gd+ e   +
   mKIAA1445   338    ATWGPWSSCSRDCELGFRVRKRTCTNPEPR-NGGLPCVGDAAE--YQ 381  

                   aCdmmdkC<-*
                    C + + C   
   mKIAA1445   382 DC-NPQAC    388  

TSP_1: domain 4 of 5, from 395 to 445: score 34.8, E = 1.9e-06
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggep.Ctgdvqelet
                      s W+ WS+CS +CG+G+ +R+R+c spaP  + ge+ C g ++e   
   mKIAA1445   395    SCWTAWSQCSASCGGGHYQRTRSCTSPAP--SPGEDiCLGLHTE--E 437  

                   eaCdmmdkC<-*
                     C + + C   
   mKIAA1445   438 ALC-STQAC    445  

TSP_1: domain 5 of 5, from 450 to 490: score 17.0, E = 0.0037
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                      s WseW  C+     G ++R R+c    P   g++ C+g+  +  ++
   mKIAA1445   450    SLWSEWGVCT---EDGAQSRSRSCEELLP---GPGACVGNSSQ--SR 488  

                   aCdmmdkC<-*
                   +C         
   mKIAA1445   489 PC------    490  

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