hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01109/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1443  ( 564 res)   mpg01109

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOX      Homeodomain                                     42.0      8e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HOX        1/2      83   139 ..     1    63 []     3.5     0.31
HOX        2/2     373   434 ..     1    63 []    35.7  6.1e-06

Alignments of top-scoring domains:
HOX: domain 1 of 2, from 83 to 139: score 3.5, E = 0.31
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +     +      e L ++F   pYPs +++  L  + gL+ + Vk+
   mKIAA1443    83    TSELDGN------EHLLQAFSYFPYPSLADIALLCLRHGLQMEKVKT 123  

                   WFQNRRakwkrqekkk<-*
                   WF  +R ++  ++ ++   
   mKIAA1443   124 WFMAQRLRCGISWSSE    139  

HOX: domain 2 of 2, from 373 to 434: score 35.7, E = 6.1e-06
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +r+++   t+eQl++L+ +F ++++  re+  +L + +gL++  +  
   mKIAA1443   373    QRKTKR-KTKEQLAILKSFFLQCQWARREDYHKLEQITGLPRPEIIQ 418  

                   WFQNRRakwkrqekkk<-*
                   WF   R+ +k+ + k+   
   mKIAA1443   419 WFGDTRYALKHGQLKW    434  

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