hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18603/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1439  ( 439 res)   mbg18603

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MH1      MH1 domain                                     134.9    1.5e-36   1
CTF_NFI  CTF/NF-I family transcription modulation reg   123.1    5.1e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MH1        1/1      57   164 ..     1   120 []   134.9  1.5e-36
CTF_NFI    1/1     206   439 .]     1   300 []   123.1  5.1e-33

Alignments of top-scoring domains:
MH1: domain 1 of 1, from 57 to 164: score 134.9, E = 1.5e-36
                   *->ekwlekavesLlKKLKkkk..qqleeLlqAVeSrGdppktkCvtIpn
                       + ++k++++Ll KL+k+++++++e+++++V+  G++p  +C++++ 
   mKIAA1439    57    PEVKQKWASRLLAKLRKDIrpEYREDFVLTVT--GKKP--PCCVLS- 98   

                   rsLdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeya
                            n+++kg++++i+CLRqad++wR+ DL++ +++K+ip ++++
   mKIAA1439    99 ---------NPDQKGKMRRIDCLRQADKVWRL-DLVMVILFKGIPLESTD 138  

                   gfeskkdeaC.nPyvCiNPYHysRve<-*
                   g+++ k+ +C+nP++C++P+H+ +++   
   mKIAA1439   139 GERLVKSPQCsNPGLCVQPHHIGVSV    164  

CTF_NFI: domain 1 of 1, from 206 to 439: score 123.1, E = 5.1e-33
                   *->qeSFVtSGVFsVtELiqVSRTPvvqGTGpNFslGELqghlaYdlnps
                      q+SFVtSGVFsVtEL++VS TP+  GTGpNFsl  L +  +Y   p 
   mKIAA1439   206    QDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPG 252  

                   gigLrRtLpStsS.SGSKRhKsgSieedvdtSPgGd.yYt....SPsSPt
                      +rR+LpStsS+S  KR K  S+e+++d SPg +++Yt++++SP S  
   mKIAA1439   253 A--MRRSLPSTSStSSTKRLK--SVEDEMD-SPGEEpFYTgqgrSPGSGS 297  

                   assRnWtEddeggsSp.tvKKpEldKspFsspSPQDsSPRLSsFtQHHrP
                    ss  W+E   g  Sp+t+KK+  +Ks FsspSP   S     FtQHHrP
   mKIAA1439   298 QSS-GWHEVEPGLPSPsTLKKS--EKSGFSSPSPSQTSSLGTAFTQHHRP 344  

                   GiPviAvhsglaRsPh.ssspLhFPtqsiLPqaaStYFpHtaIRYPPHLN
                         v  g   sPh ++s+LhFPt+ i  q +  YF+H+aIRY     
   mKIAA1439   345 ------VITGPRASPHaTPSTLHFPTSPIIQQ-PGPYFSHPAIRY----H 383  

                   PQDpLKdlVsLacdpsSqQpgp.....lNgSGQvkvkshglstqvLAPpP
                   PQ +LK++V L c  + qQ g+ +  ++NgS Q kv  + l      P P
   mKIAA1439   384 PQETLKEFVQLVCPDAGQQAGQvgflnPNGSSQGKVHNPFL------PTP 427  

                   PGlprlalrpvTktmTdskgittSPTspaYsapgTspaNRSfVGLgPRdP
                                                                     
   mKIAA1439     - -------------------------------------------------- -    

                   sfiyQaQsRiCDWylg<-*
                    f+   Qs      +    
   mKIAA1439   428 TFLSRRQS----IHIQ    439  

//