hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj00342/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1437 ( 811 res) mfj00342 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 96.6 2.8e-24 8 LRR_PS Leucine-rich repeat, plant-specific subfamil 91.9 7.4e-23 8 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily 25.5 0.0074 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/8 591 613 .. 1 24 [] 6.5 1.7e+02 LRR_TYP 1/8 591 614 .. 1 24 [] 14.9 6.3 LRR_SD22 1/3 614 635 .. 1 22 [] 13.7 17 LRR_PS 2/8 614 636 .. 1 24 [] 11.3 40 LRR_TYP 2/8 615 637 .. 1 24 [] 0.4 3.7e+02 LRR_PS 3/8 639 661 .. 1 24 [] 2.6 5.5e+02 LRR_TYP 3/8 639 661 .. 1 24 [] 5.9 79 LRR_PS 4/8 662 684 .. 1 24 [] 20.0 0.32 LRR_TYP 4/8 662 685 .. 1 24 [] 31.4 0.00012 LRR_SD22 2/3 662 693 .. 1 22 [] 13.6 18 LRR_PS 5/8 685 707 .. 1 24 [] 25.6 0.0069 LRR_TYP 5/8 686 707 .. 1 24 [] 12.2 14 LRR_PS 6/8 708 730 .. 1 24 [] 12.3 30 LRR_TYP 6/8 708 731 .. 1 24 [] 23.9 0.023 LRR_TYP 7/8 732 752 .. 1 24 [] 2.4 2.1e+02 LRR_PS 7/8 731 753 .. 1 24 [] 10.2 56 LRR_SD22 3/3 754 774 .. 1 22 [] 5.5 1.7e+02 LRR_PS 8/8 754 776 .. 1 24 [] 16.6 3.5 LRR_TYP 8/8 754 777 .. 1 24 [] 20.5 0.24 Alignments of top-scoring domains: LRR_PS: domain 1 of 8, from 591 to 613: score 6.5, E = 1.7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + +L++L+L + L IP s+++ mKIAA1437 591 MVNLTELELIRCDLE-RIPHSIFS 613 LRR_TYP: domain 1 of 8, from 591 to 614: score 14.9, E = 6.3 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++nL+eL L + L+++P+ +F+ mKIAA1437 591 MVNLTELELIRCDLERIPHSIFSL 614 LRR_SD22: domain 1 of 3, from 614 to 635: score 13.7, E = 17 *->LtnLeeLdLsqNkIkkiENLde<-* L+nL+e+dL +N +k iE + mKIAA1437 614 LHNLQEIDLKDNNLKTIEEIIS 635 LRR_PS: domain 2 of 8, from 614 to 636: score 11.3, E = 40 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++Lq++dL +NnL +I + ++ mKIAA1437 614 LHNLQEIDLKDNNLK-TIEEIISF 636 LRR_TYP: domain 2 of 8, from 615 to 637: score 0.4, E = 3.7e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +nL+e dL +N+L+++ + + mKIAA1437 615 -HNLQEIDLKDNNLKTIEEIISFQ 637 LRR_PS: domain 3 of 8, from 639 to 661: score 2.6, E = 5.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L+ L L++N++ IP ++gn mKIAA1437 639 LHRLTCLKLWYNHIA-YIPIQIGN 661 LRR_TYP: domain 3 of 8, from 639 to 661: score 5.9, E = 79 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+ L L +N++ +P ++ ++ mKIAA1437 639 LHRLTCLKLWYNHIAYIPIQI-GN 661 LRR_PS: domain 4 of 8, from 662 to 684: score 20.0, E = 0.32 *->LtsLqvLdLsnNnLsGeIPsslgn<-* Lt+L++L+L+ N++ +IP++l+ mKIAA1437 662 LTNLERLYLNRNKIE-KIPTQLFY 684 LRR_TYP: domain 4 of 8, from 662 to 685: score 31.4, E = 0.00012 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL++L+L++N+++ +P ++F + mKIAA1437 662 LTNLERLYLNRNKIEKIPTQLFYC 685 LRR_SD22: domain 2 of 3, from 662 to 693: score 13.6, E = 18 *->LtnLeeLdLsqNkI..........kkiENLde<-* LtnLe L+L+ NkI++ +++ +k+ Ld mKIAA1437 662 LTNLERLYLNRNKIekiptqlfycRKLRYLDL 693 [output cut off at A = 10 top alignments] //