hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00342/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1437  ( 811 res)   mfj00342

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             87.5    2.7e-22   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/9     495   517 ..     1    25 []     7.8    1e+02
LRR_1      2/9     593   615 ..     1    25 []     8.8       70
LRR_1      3/9     616   637 ..     1    25 []    12.6      9.6
LRR_1      4/9     641   663 ..     1    25 []     7.9       99
LRR_1      5/9     664   686 ..     1    25 []    13.1      6.9
LRR_1      6/9     687   709 ..     1    25 []    20.7    0.034
LRR_1      7/9     710   732 ..     1    25 []     6.6  1.6e+02
LRR_1      8/9     733   755 ..     1    25 []    12.6      9.6
LRR_1      9/9     756   778 ..     1    25 []    14.6      2.3

Alignments of top-scoring domains:
LRR_1: domain 1 of 9, from 495 to 517: score 7.8, E = 1e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL+ L++   +  + +++p ++ +l+   
   mKIAA1437   495    NLRALHIKF-T-DI-KEIPLWIySLK    517  

LRR_1: domain 2 of 9, from 593 to 615: score 8.8, E = 70
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL+eL+L +C   l+  +p s+ +l    
   mKIAA1437   593    NLTELELIRC--DLE-RIPHSIfSLH    615  

LRR_1: domain 3 of 9, from 616 to 637: score 12.6, E = 9.6
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL+e+dL + N +l +++++ + +++   
   mKIAA1437   616    NLQEIDLKD-N-NL-KTIEE-IiSFQ    637  

LRR_1: domain 4 of 9, from 641 to 663: score 7.9, E = 99
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+ L L + N ++   +p  +++l+   
   mKIAA1437   641    RLTCLKLWY-N-HIA-YIPIQIgNLT    663  

LRR_1: domain 5 of 9, from 664 to 686: score 13.1, E = 6.9
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nLe L+L++ N +++  +p  l  ++   
   mKIAA1437   664    NLERLYLNR-N-KIE-KIPTQLfYCR    686  

LRR_1: domain 6 of 9, from 687 to 709: score 20.7, E = 0.034
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++LdLs+ N +l+  lp++++ l+   
   mKIAA1437   687    KLRYLDLSH-N-NLT-FLPADIgLLQ    709  

LRR_1: domain 7 of 9, from 710 to 732: score 6.6, E = 1.6e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++L +   N +++  lpp+l  ++   
   mKIAA1437   710    NLQNLAVTA-N-RIE-ALPPELfQCR    732  

LRR_1: domain 8 of 9, from 733 to 755: score 12.6, E = 9.6
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+ L+L++ N  l+ slp+  + l+   
   mKIAA1437   733    KLRALHLGN-N-VLQ-SLPSRVgELT    755  

LRR_1: domain 9 of 9, from 756 to 778: score 14.6, E = 2.3
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL+ ++L+g N +l+ +lp +l+ +p   
   mKIAA1437   756    NLTQIELRG-N-RLE-CLPVELgECP    778  

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