hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg18759/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1436 ( 812 res) mbg18759 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 135.5 5.6e-36 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IG 1/6 2 74 .. 1 58 [] 11.4 10 IG 2/6 87 197 .. 1 58 [] 30.9 0.00018 IG 3/6 217 323 .. 1 58 [] 34.7 1.2e-05 IG 4/6 347 465 .. 1 58 [] 24.1 0.019 IG 5/6 489 609 .. 1 58 [] 21.6 0.11 IG 6/6 629 755 .. 1 58 [] 22.5 0.059 Alignments of top-scoring domains: IG: domain 1 of 6, from 2 to 74: score 11.4, E = 10 *->pp.vtvkeGesvtLtC.as...titWy........LtI.nvtpeDse t +G +++L + + i ++++ ++ L+I+nv+p+D+ mKIAA1436 2 ELaSTWEVGFPAQLYReRLqrgDILLRrtandaveLHIkNVQPSDQ- 47 sgGtYtCaat......sgsasseqgttLtVl<-* G Y C +++ + g+++ +++++Vl mKIAA1436 48 --GHYKCSTPstdatvQGNYED--TVQVKVL 74 IG: domain 2 of 6, from 87 to 197: score 30.9, E = 0.00018 *->pp.vtvkeGesvtLtC.as.........titWy.............. pp+++ +eGe+ +L+C as++++ +++ ++W ++++ +++ + mKIAA1436 87 PPgLSLREGEPFELRCiASttsplhthlALRWElhrgpvhrsilals 133 ...............................LtI.nvtpeDsesgGtYtC + ++ +++++ ++ ++++ + ++ +++ +L + ++ +D+ G Y+C mKIAA1436 134 hegrfhpgpgyeqryhsgdvrldtvgsdayrLSVaRALSADQ---GSYRC 180 aat.sgsasseqgttLtVl<-* +++ + + ++ + + + + mKIAA1436 181 VVSeWITEQG--SWQEIQE 197 IG: domain 3 of 6, from 217 to 323: score 34.7, E = 1.2e-05 *->pp.vtvkeGesvtLtC.as.........titWy.............. p++v+v eG ++ L+C+++++ ++ +++tWy +++++++ ++ mKIAA1436 217 PRtVSVTEGKDLDLSCnITtdrvddvrpEVTWYfkktpdtsllashm 263 ...........................LtI.nvtpeDsesgGtYtCaat. + ++++ +++++ ++ ++++ +L +++v++e+s G Y C + mKIAA1436 264 larldrdslvhssphvalshvdtrsyhLLVrDVSKENS---GYYLCLVAl 310 sgsasseqgttLtVl<-* + ++ + +V mKIAA1436 311 WAPGHN--RSWHKVA 323 IG: domain 4 of 6, from 347 to 465: score 24.1, E = 0.019 *->pp.vtvkeGesvtLtC.as...........titWy............ ++v + ++ +L+C++ +++ + t++Wy + ++++++ mKIAA1436 347 ASkVPGFSDDPTELQCrVIdtkrleagvrlTVSWYyrmtrrnddvva 393 .......................................LtI.nvtpeDs + +++ + + + +++++ +++ ++ ++++ +++I++ t+eD mKIAA1436 394 sellavmdgdwtlrygerskqraqdgefifskehtdtfnFRIqRTTEEDR 443 esgGtYtCaat.sgsasseqgttLtVl<-* G+Y+C+++ + + + +++ + mKIAA1436 444 ---GNYYCVVSaWTRQRN--NSWVKSK 465 IG: domain 5 of 6, from 489 to 609: score 21.6, E = 0.11 *->pp.vtvkeGesvtLtC.as.......titWy................ +p+ +G + ++tC++s+++ ++++++ + + ++ ++ ++++ + mKIAA1436 489 QPkPFFAAGNTFEMTCkVSsknikspRYSVLitaekpvgdlsspnet 535 .....................................LtI.nvtpeDses + + ++++ + + ++ ++ ++ + + + + ++ + +++D+ mKIAA1436 536 kyiisldqdsvvklenwtdasrvdgvvlekvqedefrYRMyQTQVSDA-- 583 gGtYtCaat.....sgsasseqgttLtVl<-* G Y+C++t ++ +gs + ++ + + mKIAA1436 584 -GLYRCMVTawspiGGSLWR--EAATSLS 609 IG: domain 6 of 6, from 629 to 755: score 22.5, E = 0.059 *->pp.vtvkeGesvtLtC.as.............titWy.......... + + +v +G+ ++L C ++ + ++++ ++W+ ++ + ++ mKIAA1436 629 SDtPSVTRGDLIKLFCiVTvegavldpddmafDVSWFavhsfgldka 675 ...................................LtI.nvtpeDsesgG + ++ ++++ ++++++ +++ + + + L++++ + +D G mKIAA1436 676 pvllssldrkgvvttgqrdwkstvslervsvleflLQVhGSEDQDF---G 722 tYtCaat............sgsasseqgttLtVl<-* +Y+C +t+ ++++++ + +++s ++ +tV+ mKIAA1436 723 NYYCSVTpwvrsptgswqrEAEIHS-RPIFITVK 755 //