hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp03169/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1435 ( 411 res) mbp03169 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 129.2 4.4e-34 7 FYVE Protein present in Fab1, YOTB, Vac1, and EEA 91.6 9.4e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/7 14 53 .. 1 46 [] 28.6 0.00088 WD40 2/7 57 97 .. 1 46 [] 4.5 96 WD40 3/7 104 143 .. 1 46 [] 16.8 1.1 WD40 4/7 146 184 .. 1 46 [] 0.0 4.9e+02 WD40 5/7 189 228 .. 1 46 [] 40.7 2e-07 WD40 6/7 232 271 .. 1 46 [] 27.3 0.0021 FYVE 1/1 277 354 .. 1 81 [] 91.6 9.4e-23 WD40 7/7 356 395 .. 1 46 [] 23.5 0.029 Alignments of top-scoring domains: WD40: domain 1 of 7, from 14 to 53: score 28.6, E = 0.00088 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ll++++gH++ +Vt+ p + ++++s+D+tir+W mKIAA1435 14 RpVLLSKIEGHQD--AVTAALLIPKE------DGVITASeDRTIRVW 52 d<-* mKIAA1435 53 L 53 WD40: domain 2 of 7, from 57 to 97: score 4.5, E = 96 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ ++ Ht sp++++a+++d+ +++++g ++g + + mKIAA1435 57 SgQYWPSIY-HTMASPCSAMAYHHDS------RRIFVGQdNGAVMEF 96 d<-* + mKIAA1435 97 H 97 WD40: domain 3 of 7, from 104 to 143: score 16.8, E = 1.1 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++t+++H++ +V+++ fs + ++++s ++D+++ mKIAA1435 104 KmNFIKTYPAHQN--RVSAIIFSLSA------EWVISTGhDKCVSWM 142 d<-* mKIAA1435 143 C 143 WD40: domain 4 of 7, from 146 to 184: score 0.0, E = 4.9e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ l ++ + ++++++ d ++ ++g+ g+i l mKIAA1435 146 SgNMLGRHF-FSS--WASCLQYDLDT------QHAFVGDySGQITLL 183 d<-* + mKIAA1435 184 K 184 WD40: domain 5 of 7, from 189 to 228: score 40.7, E = 2e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t +++ tlkgH+g ++ ++ ++p +ll+sg +D+++ +W mKIAA1435 189 TcSVITTLKGHEG--SIACLWWDPIQ------RLLFSGAsDNSVIMW 227 d<-* d mKIAA1435 228 D 228 WD40: domain 6 of 7, from 232 to 271: score 27.3, E = 0.0021 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + l+gH + +V s+++ + ++l+s+s Dg i +W mKIAA1435 232 RkGRTLLLQGHHD--RVQSLCYLQLT------RQLVSCSaDGGIAVW 270 d<-* + mKIAA1435 271 N 271 FYVE: domain 1 of 1, from 277 to 354: score 91.6, E = 9.4e-23 *->etaphWvpDeeasnClmnCgkeFtl..........vtrRrHHCRnCG e+ap+W ++ ++C ++C+++F ++ ++ +++++ R+HHCR+CG mKIAA1435 277 EEAPQWLES---DSC-QKCEQPFFWnikqmwdtktLGLRQHHCRKCG 319 rifCskCsskkaplpklgkekkngknedftpvRVCdsCyerlsk<-* + +C+kCssk++ +p +g e ++vRVCdsCy++++ mKIAA1435 320 QAVCGKCSSKRSSYPVMGFE---------FQVRVCDSCYDSIKD 354 WD40: domain 7 of 7, from 356 to 395: score 23.5, E = 0.029 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ l+t++ ++ +++++ + l++++++D+ +++W mKIAA1435 356 DrTSLATFHEGKH--NISHMSMDIAR------GLMVTCGtDRVVKIW 394 d<-* d mKIAA1435 395 D 395 //