hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp03169/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1435  ( 411 res)   mbp03169

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       114.5      2e-30   5
FYVE     FYVE zinc finger                                89.8    5.7e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/5      16    53 ..     1    38 []    25.1   0.0017
WD40       2/5     106   142 ..     1    38 []    13.2      4.8
WD40       3/5     191   228 ..     1    38 []    39.1    1e-07
WD40       4/5     234   271 ..     1    38 []    23.2   0.0063
FYVE       1/1     280   354 ..     1    77 []    89.8  5.7e-23
WD40       5/5     358   395 ..     1    38 []    22.0    0.014

Alignments of top-scoring domains:
WD40: domain 1 of 5, from 16 to 53: score 25.1, E = 0.0017
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l+ ++gH+++Vt+    p     ++++S+D+ti++W    
   mKIAA1435    16    VLLSKIeGHQDAVTAALLIPK-EDGVITASEDRTIRVWL    53   

WD40: domain 2 of 5, from 106 to 142: score 13.2, E = 4.8
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++++++H++ V+++ fs +  ++++s ++D+++  W    
   mKIAA1435   106    NFIKTYpAHQNRVSAIIFSLS-AEWVISTGHDKCVS-WM    142  

WD40: domain 3 of 5, from 191 to 228: score 39.1, E = 1e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++l+gH++++ c+ ++p  ++ll+sg +D+++ +Wd   
   mKIAA1435   191    SVITTLkGHEGSIACLWWDPI-QRLLFSGASDNSVIMWD    228  

WD40: domain 4 of 5, from 234 to 271: score 23.2, E = 0.0063
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +  l+gH + V ++++ +   ++l+s+S+Dg i +W+   
   mKIAA1435   234    GRTLLLqGHHDRVQSLCYLQL-TRQLVSCSADGGIAVWN    271  

FYVE: domain 1 of 1, from 280 to 354: score 89.8, E = 5.7e-23
                   *->phWvpDeevsnCmrCgkpFtk..........ltkRrHHCRaCGrifC
                      p+W+ +++   C  C++pF+++ ++  ++++l  R+HHCR CG+ +C
   mKIAA1435   280    PQWLESDS---CQKCEQPFFWnikqmwdtktLGLRQHHCRKCGQAVC 323  

                   gsCssktvllpylgiaallkndviekpvRVCdsCydrlnk<-*
                   g+Cssk++++p +g          e +vRVCdsCyd+ ++   
   mKIAA1435   324 GKCSSKRSSYPVMGF---------EFQVRVCDSCYDSIKD    354  

WD40: domain 5 of 5, from 358 to 395: score 22.0, E = 0.014
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + la+++  ++ ++ ++ +   + l+++++ D+ +kiWd   
   mKIAA1435   358    TSLATFhEGKHNISHMSMDIA-RGLMVTCGTDRVVKIWD    395  

//