hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj27243/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1431  ( 833 res)   mfj27243

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    274.9    6.1e-78  14
KRAB     krueppel associated box                        125.0    8.1e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1     111   171 ..     1    62 []   125.0  8.1e-33
ZnF_C2H2   1/14    385   407 ..     1    23 []    28.6  0.00085
ZnF_C2H2   2/14    413   435 ..     1    23 []    27.7   0.0016
ZnF_C2H2   3/14    441   464 ..     1    23 []    26.9   0.0027
ZnF_C2H2   4/14    470   492 ..     1    23 []    24.0    0.021
ZnF_C2H2   5/14    498   520 ..     1    23 []    25.9   0.0057
ZnF_C2H2   6/14    526   548 ..     1    23 []    26.4    0.004
ZnF_C2H2   7/14    554   576 ..     1    23 []    25.9   0.0054
ZnF_C2H2   8/14    582   604 ..     1    23 []    24.6    0.014
ZnF_C2H2   9/14    610   632 ..     1    23 []    26.7   0.0031
ZnF_C2H2  10/14    638   660 ..     1    23 []    28.3   0.0011
ZnF_C2H2  11/14    666   688 ..     1    23 []    22.4    0.064
ZnF_C2H2  12/14    694   716 ..     1    23 []    22.7    0.052
ZnF_C2H2  13/14    722   744 ..     1    23 []    27.8   0.0015
ZnF_C2H2  14/14    750   772 ..     1    23 []    26.0   0.0053

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 111 to 171: score 125.0, E = 8.1e-33
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF DVAV FsqEEWe+L + Qr LY+ VMl+NY+nL+SLG ++ s+
   mKIAA1431   111    VTFGDVAVVFSQEEWEWLNSEQRSLYWKVMLDNYRNLASLG-LCASQ 156  

                   pdliskLEqgeEpwi<-*
                   pd+i+ LEqg  pw+   
   mKIAA1431   157 PDMITSLEQGRDPWM    171  

ZnF_C2H2: domain 1 of 14, from 385 to 407: score 28.6, E = 0.00085
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k+f++ ++L+ H+r+H   
   mKIAA1431   385    FQCNE-CKKTFTQSsSLTVHQRIH    407  

ZnF_C2H2: domain 2 of 14, from 413 to 435: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fs+ +++ rH+r H   
   mKIAA1431   413    YKCNQ-CGKAFSDGsSFARHQRCH    435  

ZnF_C2H2: domain 3 of 14, from 441 to 464: score 26.9, E = 0.0027
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+Cp+ Cgk f + ++L+rH r  H   
   mKIAA1431   441    YECPE-CGKAFIQNtSLVRHWRyYH    464  

ZnF_C2H2: domain 4 of 14, from 470 to 492: score 24.0, E = 0.021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C   Cgk fs++  L++H r+H   
   mKIAA1431   470    FDCID-CGKAFSDHiGLNQHRRIH    492  

ZnF_C2H2: domain 5 of 14, from 498 to 520: score 25.9, E = 0.0057
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+ksf+  ++L+ H+r+H   
   mKIAA1431   498    YTCEV-CHKSFRYGsSLTVHQRIH    520  

ZnF_C2H2: domain 6 of 14, from 526 to 548: score 26.4, E = 0.004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+i C k fs++ +L++H+rvH   
   mKIAA1431   526    YECEI-CRKAFSHHaSLTQHQRVH    548  

ZnF_C2H2: domain 7 of 14, from 554 to 576: score 25.9, E = 0.0054
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f++  +L  H r+H   
   mKIAA1431   554    FKCKE-CGKAFRQNiHLASHWRIH    576  

ZnF_C2H2: domain 8 of 14, from 582 to 604: score 24.6, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgksfs  ++L  H+r+H   
   mKIAA1431   582    FECGE-CGKSFSISsQLATHQRIH    604  

ZnF_C2H2: domain 9 of 14, from 610 to 632: score 26.7, E = 0.0031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k f++k +L +H+++H   
   mKIAA1431   610    YECKV-CRKAFTQKaHLAQHQKTH    632  

	[output cut off at A = 10 top alignments]
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