hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj27243/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1431 ( 833 res) mfj27243 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 339.0 5.2e-98 14 KRAB KRAB box 99.9 5e-26 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/2 111 151 .. 1 41 [] 94.1 2.8e-24 KRAB 2/2 244 275 .. 1 41 [] 4.6 1 zf-C2H2 1/14 385 407 .. 1 24 [] 36.8 4.9e-07 zf-C2H2 2/14 413 435 .. 1 24 [] 26.5 0.00064 zf-C2H2 3/14 441 464 .. 1 24 [] 33.6 4.5e-06 zf-C2H2 4/14 470 492 .. 1 24 [] 23.9 0.0038 zf-C2H2 5/14 498 520 .. 1 24 [] 31.5 1.9e-05 zf-C2H2 6/14 526 548 .. 1 24 [] 33.1 6.6e-06 zf-C2H2 7/14 554 576 .. 1 24 [] 34.1 3.2e-06 zf-C2H2 8/14 582 604 .. 1 24 [] 33.9 3.7e-06 zf-C2H2 9/14 610 632 .. 1 24 [] 33.7 4.2e-06 zf-C2H2 10/14 638 660 .. 1 24 [] 35.6 1.1e-06 zf-C2H2 11/14 666 688 .. 1 24 [] 23.1 0.0065 zf-C2H2 12/14 694 716 .. 1 24 [] 22.9 0.0074 zf-C2H2 13/14 722 744 .. 1 24 [] 32.4 1e-05 zf-C2H2 14/14 750 772 .. 1 24 [] 28.3 0.00018 Alignments of top-scoring domains: KRAB: domain 1 of 2, from 111 to 151: score 94.1, E = 2.8e-24 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* VtF DVAV F+qEEW++L++ Qr+LY++VMl+NyrnL+Slg mKIAA1431 111 VTFGDVAVVFSQEEWEWLNSEQRSLYWKVMLDNYRNLASLG 151 KRAB: domain 2 of 2, from 244 to 275: score 4.6, E = 1 *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-* + ++ ++L +aQr++++ V++EN+++ S+g mKIAA1431 244 ---------LARDSPAQLVSAQRSFCKSVTWENCGDRGSVG 275 zf-C2H2: domain 1 of 14, from 385 to 407: score 36.8, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C+k+F+++s+L+ H+r+H mKIAA1431 385 FQCN-ECKKTFTQSSSLTVHQRIH 407 zf-C2H2: domain 2 of 14, from 413 to 435: score 26.5, E = 0.00064 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s++ rH+r H mKIAA1431 413 YKCN-QCGKAFSDGSSFARHQRCH 435 zf-C2H2: domain 3 of 14, from 441 to 464: score 33.6, E = 4.5e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+Cp +Cgk+F ++ +L rH+r H mKIAA1431 441 YECP-ECGKAFIQNTSLVRHWRYyH 464 zf-C2H2: domain 4 of 14, from 470 to 492: score 23.9, E = 0.0038 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C dCgk+Fs++ L++H+r+H mKIAA1431 470 FDCI-DCGKAFSDHIGLNQHRRIH 492 zf-C2H2: domain 5 of 14, from 498 to 520: score 31.5, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksF+ s+L+ H+r+H mKIAA1431 498 YTCE-VCHKSFRYGSSLTVHQRIH 520 zf-C2H2: domain 6 of 14, from 526 to 548: score 33.1, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs++++L++H+r+H mKIAA1431 526 YECE-ICRKAFSHHASLTQHQRVH 548 zf-C2H2: domain 7 of 14, from 554 to 576: score 34.1, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F+++ +L +H+r+H mKIAA1431 554 FKCK-ECGKAFRQNIHLASHWRIH 576 zf-C2H2: domain 8 of 14, from 582 to 604: score 33.9, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +CgksFs +s+L +H+r+H mKIAA1431 582 FECG-ECGKSFSISSQLATHQRIH 604 zf-C2H2: domain 9 of 14, from 610 to 632: score 33.7, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F++k++L +H++tH mKIAA1431 610 YECK-VCRKAFTQKAHLAQHQKTH 632 zf-C2H2: domain 10 of 14, from 638 to 660: score 35.6, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs+ +L +H+r+H mKIAA1431 638 YECK-ECGKAFSQTTHLIQHQRVH 660 zf-C2H2: domain 11 of 14, from 666 to 688: score 23.1, E = 0.0065 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F ++s+ ++H+r H mKIAA1431 666 YKCL-ECGKAFGDNSSCTQHRRLH 688 zf-C2H2: domain 12 of 14, from 694 to 716: score 22.9, E = 0.0074 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++ks+L H+r H mKIAA1431 694 YECV-ECGKTFKTKSSLICHRRCH 716 zf-C2H2: domain 13 of 14, from 722 to 744: score 32.4, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+Fs++ +L H+r+H mKIAA1431 722 YECS-ACGKAFSHRQSLSVHQRIH 744 zf-C2H2: domain 14 of 14, from 750 to 772: score 28.3, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F + ++L++H+r+H mKIAA1431 750 YECK-ECRKTFIQIGHLNQHKRVH 772 //