hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic03043/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1428  ( 223 res)   mic03043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PTB      Phosphotyrosine-binding domain, phosphotyros    45.1    9.6e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PTB        1/1      12   151 ..     1   156 []    45.1  9.6e-09

Alignments of top-scoring domains:
PTB: domain 1 of 1, from 12 to 151: score 45.1, E = 9.6e-09
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr.....se
                      + ++ f V++LGs+ev++ +        ++v+ e +r++   +    
   mKIAA1428    12    ILHQLFIVRFLGSMEVKSDD-------HPDVVYETMRQILaaraiHN 51   

                   kkkpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgd
                     ++++ +l v+ d++klid++t+  ++++pl+ +   a ++        
   mKIAA1428    52 IFRMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQ-------- 93   

                   gstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaigqa
                      +++r+Fg++ r  g++   ++ +   C++F++ ++  e i+ ++g a
   mKIAA1428    94 ---ENKRLFGFVLRTSGGRS--ESNLSSVCYIFESNNEG-EKICDSVGLA 137  

                   Fqvayelklkarse<-*
                    q a +  l++r +   
   mKIAA1428   138 KQIALHAELDRRAS    151  

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