hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mic/mic03043/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1428 ( 223 res) mic03043 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PID Phosphotyrosine interaction domain (PTB/PID) 37.8 2.4e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PID 1/1 17 148 .. 1 166 [] 37.8 2.4e-07 Alignments of top-scoring domains: PID: domain 1 of 1, from 17 to 148: score 37.8, E = 2.4e-07 *->FeVkYLGsvEVpeemrapskstRmqvareairrlkmavpgKkpkakk F V++LGs+EV++ + +v+ e +r++ +a mKIAA1428 17 FIVRFLGSMEVKSDDH-------PDVVYETMRQILAA---------- 46 ikrskgstgerqagtkidLsistdglklldekteaekevlhehplrkISF + + + +t+ +L ++ d+lkl+d++t + ++pl+ + mKIAA1428 47 -----RAIHNIFRMTESHLLVTCDCLKLIDPQT---QVTRLTFPLPCVVL 88 iAvggDpdVdlrtFayvrstddsliaadgatsrfaCHvFecekgkqlAed A + + ++r F++v +t+ + + C++Fe+ +e mKIAA1428 89 YAT--HQE-NKRLFGFVLRTSG---GRSESNLSSVCYIFESNN---EGEK 129 iaqavgqAFevaYqeflra<-* i +vg A + a+ l++ mKIAA1428 130 ICDSVGLAKQIALHAELDR 148 //