hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18863/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1427  ( 443 res)   mbg18863

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                       77.6    2.6e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2     192   276 ..     1    88 []    18.1    0.037
C2         2/2     321   411 ..     1    88 []    59.5  7.3e-14

Alignments of top-scoring domains:
C2: domain 1 of 2, from 192 to 276: score 18.1, E = 0.037
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qkkkTkvikkt
                      L Vt +eA          g +D+Y   s+   k ++   +T  +k+ 
   mKIAA1427   192    LFVTSLEAVTSDH----EGGCDCYIQGSVAV-KTGsVEAQTALKKRQ 233  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   l+ +W+E + +++ +++l   tL++++   drf+r+ ++Ge +   
   mKIAA1427   234 LHTTWEEGLALPLGEEELPTaTLTLTLRTCDRFSRHSVIGELR    276  

C2: domain 2 of 2, from 321 to 411: score 59.5, E = 7.3e-14
                   *->LrVtvieAknLppkDfkng..ksDPYVkvslggdkkd.qkkkTkvik
                      L V +i+AknL+  + ++     D  Vkv+l  + ++ +kk+Tk +k
   mKIAA1427   321    LLVVLIKAKNLHSNQ-SKEllGKDVSVKVTLKHQAQKlKKKQTKRAK 366  

                   ktlNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                      NPvWNE+ +Fe+p++ l  +++e+eV   +  g    lG++s   
   mKIAA1427   367 HKINPVWNEMIMFELPDDLLRAsSVELEVLGQGEEGPSCELGHCS    411  

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