hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05674/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1424  ( 1262 res)   mbg05674

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   221.9    5.7e-62   1
PH       Pleckstrin homology domain.                     70.2    2.6e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     243   353 ..     1    82 []    70.2  2.6e-16
RhoGAP     1/1     470   647 ..     1   193 []   221.9  5.7e-62

Alignments of top-scoring domains:
PH: domain 1 of 1, from 243 to 353: score 70.2, E = 2.6e-16
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                        +eGwL  +   ++++++ +++ + wk+ y+vL++++L++yk++++
   mKIAA1424   243    AAREGWLQFRPlvtdkgkrvggsIrPWKQMYVVLRGHSLYLYKDRre 289  

                   .....kpkgsipLsgcsvre.p.......cFeivt.drtlllqAeseeer
                   ++++++   +i+++ c ++ + ++ +++++F+++t+d + l+qAe+ +++
   mKIAA1424   290 qttpsEEEQPISVNACLIDIsYsetkrrnVFRLTTsDCECLFQAEDRDDM 339  

                   eeWvealqsaiaka<-*
                    +W++ +q+ ++ +   
   mKIAA1424   340 LSWIKTIQESSNLN    353  

RhoGAP: domain 1 of 1, from 470 to 647: score 221.9, E = 5.7e-62
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + iP+iv+ C+  +e+rGl+  GIYRv+G++  +  ++e++++g+ +
   mKIAA1424   470    RYIPLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEELNKGMAd 516  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                    ++           d+ ++d +++++lLK+++R+LPePL+t + y +fie
   mKIAA1424   517 IDIQ----------DDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIE 556  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a +               ed+  rlr l++l++ LP+++++tL++L  HL
   mKIAA1424   557 ANRK--------------EDPLDRLRTLKRLIHDLPEHHFETLKFLSaHL 592  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   + Vae+se+NkM +rNLAivFgPtL r ++++ ++ +t++  q k+vetl
   mKIAA1424   593 KTVAENSEKNKMEPRNLAIVFGPTLVRTSednmthmVTHMPDQYKIVETL 642  

                   ienad<-*
                   i+++d   
   mKIAA1424   643 IQHHD    647  

//